Re: [gmod-cmap] Help: Import data by using BLAST

[Lee A. <ope...@gm...>]

2009/3/25 Ken Youens-Clark <ky...@gm...>:
> On Mar 25, 2009, at 10:16 AM, Lee Amy wrote:
>
>> I encounter some data import tasks in recent days and I have no idea
>> to deal with it correctly.
>>
>> There are two data sets A and B. I use NCBI BLAST to get results about
>> their identity. So The A data set will be map A and another will be
>> map B. My task is to make correspondence between the A's items and B's
>> items based on E-Vaule. For instance, I could set up a threshold 0.001
>> so any E-Value of alignment pair between A and B will make a
>> correspondence.
>>
>> I don't know how to solve such problems. So could any one show me
>> some hints?
>
> Amy,
>
> If you have established meaningful feature accessions (in the
> "cmap_feature.feature_acc" field), then you simply need to create a
> tab-delimited file naming "feature_acc1," "feature_acc2," and the
> correspondence type to relate each of the A-B pairs that are above
> your threshold.
>
> ky
>
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Thanks, Ken. I read mails at the list before I post. It seems there
are some similar problems I ever asked. Thank you very much. I could
use this way to process the results fast.

Regards,

Amy