Re: [gmod-cmap] Help: Import data by using BLAST

[Ken Youens-C. <ky...@gm...>]

On Mar 25, 2009, at 10:16 AM, Lee Amy wrote:

> I encounter some data import tasks in recent days and I have no idea
> to deal with it correctly.
>
> There are two data sets A and B. I use NCBI BLAST to get results about
> their identity. So The A data set will be map A and another will be
> map B. My task is to make correspondence between the A's items and B's
> items based on E-Vaule. For instance, I could set up a threshold 0.001
> so any E-Value of alignment pair between A and B will make a
> correspondence.
>
> I don't know how to solve such problems. So could any one show me  
> some hints?

Amy,

If you have established meaningful feature accessions (in the  
"cmap_feature.feature_acc" field), then you simply need to create a  
tab-delimited file naming "feature_acc1," "feature_acc2," and the  
correspondence type to relate each of the A-B pairs that are above  
your threshold.

ky