[Gmod-apollo-cmts] CVS: apollo/src/java/apollo/datamodel Transcript.java,1.96,1.97

[Mark G. <mg...@us...>]

Update of /cvsroot/gmod/apollo/src/java/apollo/datamodel
In directory sc8-pr-cvs1:/tmp/cvs-serv27858/src/java/apollo/datamodel

Modified Files:
	Transcript.java 
Log Message:
Fixed bug sima found where gene CG12548 was not saving. The problem
was an overhanging transposon. Transcript.get_cDNA was being called at
save time. Since it didnt haveWholeSequence but cDNA was non null it
returned cDNA.getResidues(). But this cDNA had null residues causing a
null pointer exception. Now it checks if getRes is null, and calls
super.get_cDNA if it is. 



Index: Transcript.java
===================================================================
RCS file: /cvsroot/gmod/apollo/src/java/apollo/datamodel/Transcript.java,v
retrieving revision 1.96
retrieving revision 1.97
diff -C2 -d -r1.96 -r1.97
*** Transcript.java	30 Jun 2003 21:13:04 -0000	1.96
--- Transcript.java	1 Jul 2003 23:13:54 -0000	1.97
***************
*** 150,154 ****
        from the ref seq. */
    public String get_cDNA () {
!     if (!haveWholeSequence() && cDNA !=null) return cDNA.getResidues();
  
      // This gets sequence from the entry sequence
--- 150,158 ----
        from the ref seq. */
    public String get_cDNA () {
!     if (!haveWholeSequence() && cDNA !=null) {
!       // cDNA sometimes does not have residues
!       if (cDNA.getResidues() == null) return super.get_cDNA(); 
!       return cDNA.getResidues();
!     }
  
      // This gets sequence from the entry sequence