gmod-schema

[Inderski, B. - A. <Blake.Inderski@ARS.USDA.GOV>]

Greetings!

I’m new to Chado and uncertain on how to properly integrate data into the existing Chado schema. My target organism is Porcine Reproductive and Respiratory Syndrome Virus (PRRSV), a single stranded, positive sense RNA virus with a genome approximately 15kb in length. Below are the data fields I’m planning to include, as well as related examples:

Metadata
Unique ID (automatically generated, sequential identifier) – GB:0000000001
GenBank accession - U40784
Strain/isolate – PRRSv 92V058
Sample isolate source – serum, lymph node, etc.
Genotype – Type 1 or Type 2
Author – Doe, J.
Sample collection location (state/country) - North Carolina, USA
Sample collection date – 30-Dec-2015

Sequencing data
Raw DNA sequence – tttggtaatgtgtcaggcattgtggctgtgtgtgtta…
Open reading frame (ORF) and non-structural protein (nsp) type – ORF1ab, ORF2, nsp1, nsp12
ORF/nsp location (relative to raw DNA sequence) – 3-501
ORF/nsp translation – MAAATLFLLAGAQHIMVSEAFACKPCFSTHLSD…

Any help is much appreciated!

Thanks,
Blake







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