Dear GMOD users,
I have been working on genome/transcriptome browser for visualizing
next-generation sequencing data. tbrowse is HTML5/javascript/ajax
based browser designed to completely segregate data from
visualization, making development much easier, reducing the load on
servers and offering a much more interactive experience to users.
Currently the tool is focused at visualizing RNA-seq data. RNA-seq
data as genome tracks can help visualize spatial relationships between
expression and other genome annotations, but does a poor job of
visualizing change in expression over conditions. tbrowse offers both
a genome track visualization and also plots expression over samples.
The code and documentation are at http://code.google.com/p/tbrowse/
There is a demo at http://butler.fri.uni-lj.si/anup/tbrowse/
Anup Parikh
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