gmod-ajax

[Gmod-ajax] jbrowse in iPad?

[Harry Y. <hy...@vb...>]

Congratulations for the 1.1 release. 

I integrated the new version into our system and tested. It works great!. But when I tested with iPad, it did not work and was not able to find any place that works for iPad. Neither two demos at http://jbrowse.org/?page_id=22 does not work as showed in the youtube video. 

Where can I find a demo that I can work with my iPad? 

I also found a touchBrowse.js  from the git branch, it seems like I need to do some activation in addition to adding the js lib into the page. Is that correct?

Can you show how to make it work with iPad?


Thanks,
Harry Yoo

Re: [Gmod-ajax] jbrowse in iPad?

[Ian H. <ih...@be...>]

Hi Harry, thanks for your interest in JBrowse. You can now get to the 
touchscreen demo if you point your iPad here:

http://jbrowse.org/ucsc/hg19/touch.html

A few more details here:
http://jbrowse.org/?page_id=11

It should be present in the next release (which is imminent)

All the best, Ian

(cc'd Brenton, Ann & Brian, all of whom asked about this. NB the 
pinch-zoom is not yet implemented, though could probably be added fairly 
easily)


On 9/16/10 7:25 AM, Harry Yoo wrote:
> Congratulations for the 1.1 release.
>
> I integrated the new version into our system and tested. It works
> great!. But when I tested with iPad, it did not work and was not able to
> find any place that works for iPad. Neither two demos at
> http://jbrowse.org/?page_id=22 does not work as showed in the youtube
> video.
>
> Where can I find a demo that I can work with my iPad?
>
> I also found a touchBrowse.js from the git branch, it seems like I need
> to do some activation in addition to adding the js lib into the page. Is
> that correct?
>
> Can you show how to make it work with iPad?
>
>
> Thanks,
> Harry Yoo
>
>
>
> ------------------------------------------------------------------------------
> Start uncovering the many advantages of virtual appliances
> and start using them to simplify application deployment and
> accelerate your shift to cloud computing.
> http://p.sf.net/sfu/novell-sfdev2dev
>
>
>
> _______________________________________________
> Gmod-ajax mailing list
> Gmo...@li...
> https://lists.sourceforge.net/lists/listinfo/gmod-ajax

Re: [Gmod-ajax] jbrowse in iPad?

[Brian O'C. <bri...@gm...>]

Hey,

Ian, great to hear you guys are working on this (and the release is
coming up too!).  I showed a version I hacked to get the touch to work
to a bunch of people over the last few weeks and everyone is really
impressed with this browser.  There's something about the iPad touch
interface + this browser that makes people smile!  So I'm glad to hear
the touch feature is being added to the official release.  If anyone
is interested in hacking this to work right now here's what I had to
add to the index.html.  This worked for me on a checkout from a couple
weeks ago...

function init()
{
    document.addEventListener("touchstart", touchHandle, true);
    document.addEventListener("touchmove", touchHandle, true);
    document.addEventListener("touchend", touchHandle, true);
    document.addEventListener("touchcancel", touchHandle, true);

    load();
    console.log("In init");
}

init();

But looking at the current demo HTML it looks like you just include
the touch.js file now...

On a different topic, what is the plan for adding custom tracks to the
browser?  Right now I can add via importing a GFF file but are there
plans to provide a mechanism for end users to upload their custom
tracks?  I'm building a query engine (http://seqware.sf.net) and it
integrates with genome browsers by providing back a URL to load a
custom track with.  This has been a really convenient way to display
the results of queries in a genome browser like UCSC or IGV.  Is this
sort of functionality planned for JBrowse?

--Brian

On Sat, Dec 18, 2010 at 12:53 AM, Ian Holmes <ih...@be...> wrote:
> Hi Harry, thanks for your interest in JBrowse. You can now get to the
> touchscreen demo if you point your iPad here:
>
> http://jbrowse.org/ucsc/hg19/touch.html
>
> A few more details here:
> http://jbrowse.org/?page_id=11
>
> It should be present in the next release (which is imminent)
>
> All the best, Ian
>
> (cc'd Brenton, Ann & Brian, all of whom asked about this. NB the pinch-zoom
> is not yet implemented, though could probably be added fairly easily)
>
>
> On 9/16/10 7:25 AM, Harry Yoo wrote:
>>
>> Congratulations for the 1.1 release.
>>
>> I integrated the new version into our system and tested. It works
>> great!. But when I tested with iPad, it did not work and was not able to
>> find any place that works for iPad. Neither two demos at
>> http://jbrowse.org/?page_id=22 does not work as showed in the youtube
>> video.
>>
>> Where can I find a demo that I can work with my iPad?
>>
>> I also found a touchBrowse.js from the git branch, it seems like I need
>> to do some activation in addition to adding the js lib into the page. Is
>> that correct?
>>
>> Can you show how to make it work with iPad?
>>
>>
>> Thanks,
>> Harry Yoo
>>
>>
>>
>>
>> ------------------------------------------------------------------------------
>> Start uncovering the many advantages of virtual appliances
>> and start using them to simplify application deployment and
>> accelerate your shift to cloud computing.
>> http://p.sf.net/sfu/novell-sfdev2dev
>>
>>
>>
>> _______________________________________________
>> Gmod-ajax mailing list
>> Gmo...@li...
>> https://lists.sourceforge.net/lists/listinfo/gmod-ajax
>

Re: [Gmod-ajax] jbrowse in iPad?

[Ian H. <ih...@be...>]

Thanks Brian!

Custom tracks have always been on our wishlist since Day 1 but for various reasons have repeatedly been postponed. At one point we prototyped using TWiki - this code is still in the repo but not very mature. However, I suspect the quickest way to do this now would be via Galaxy. Do we have any Galaxy experts in the house..... Otherwise I may take a crack at it in the New Year.

-Ian (by phone)

On Dec 18, 2010, at 9:15 AM, "Brian O'Connor" <bri...@gm...> wrote:

> Hey,
> 
> Ian, great to hear you guys are working on this (and the release is
> coming up too!).  I showed a version I hacked to get the touch to work
> to a bunch of people over the last few weeks and everyone is really
> impressed with this browser.  There's something about the iPad touch
> interface + this browser that makes people smile!  So I'm glad to hear
> the touch feature is being added to the official release.  If anyone
> is interested in hacking this to work right now here's what I had to
> add to the index.html.  This worked for me on a checkout from a couple
> weeks ago...
> 
> function init()
> {
>    document.addEventListener("touchstart", touchHandle, true);
>    document.addEventListener("touchmove", touchHandle, true);
>    document.addEventListener("touchend", touchHandle, true);
>    document.addEventListener("touchcancel", touchHandle, true);
> 
>    load();
>    console.log("In init");
> }
> 
> init();
> 
> But looking at the current demo HTML it looks like you just include
> the touch.js file now...
> 
> On a different topic, what is the plan for adding custom tracks to the
> browser?  Right now I can add via importing a GFF file but are there
> plans to provide a mechanism for end users to upload their custom
> tracks?  I'm building a query engine (http://seqware.sf.net) and it
> integrates with genome browsers by providing back a URL to load a
> custom track with.  This has been a really convenient way to display
> the results of queries in a genome browser like UCSC or IGV.  Is this
> sort of functionality planned for JBrowse?
> 
> --Brian
> 
> On Sat, Dec 18, 2010 at 12:53 AM, Ian Holmes <ih...@be...> wrote:
>> Hi Harry, thanks for your interest in JBrowse. You can now get to the
>> touchscreen demo if you point your iPad here:
>> 
>> http://jbrowse.org/ucsc/hg19/touch.html
>> 
>> A few more details here:
>> http://jbrowse.org/?page_id=11
>> 
>> It should be present in the next release (which is imminent)
>> 
>> All the best, Ian
>> 
>> (cc'd Brenton, Ann & Brian, all of whom asked about this. NB the pinch-zoom
>> is not yet implemented, though could probably be added fairly easily)
>> 
>> 
>> On 9/16/10 7:25 AM, Harry Yoo wrote:
>>> 
>>> Congratulations for the 1.1 release.
>>> 
>>> I integrated the new version into our system and tested. It works
>>> great!. But when I tested with iPad, it did not work and was not able to
>>> find any place that works for iPad. Neither two demos at
>>> http://jbrowse.org/?page_id=22 does not work as showed in the youtube
>>> video.
>>> 
>>> Where can I find a demo that I can work with my iPad?
>>> 
>>> I also found a touchBrowse.js from the git branch, it seems like I need
>>> to do some activation in addition to adding the js lib into the page. Is
>>> that correct?
>>> 
>>> Can you show how to make it work with iPad?
>>> 
>>> 
>>> Thanks,
>>> Harry Yoo
>>> 
>>> 
>>> 
>>> 
>>> ------------------------------------------------------------------------------
>>> Start uncovering the many advantages of virtual appliances
>>> and start using them to simplify application deployment and
>>> accelerate your shift to cloud computing.
>>> http://p.sf.net/sfu/novell-sfdev2dev
>>> 
>>> 
>>> 
>>> _______________________________________________
>>> Gmod-ajax mailing list
>>> Gmo...@li...
>>> https://lists.sourceforge.net/lists/listinfo/gmod-ajax
>> 

Re: [Gmod-ajax] jbrowse in iPad?

[Brian O'C. <bri...@gm...>]

Cool Ian. I may have some developer hours I could throw at this in the
new year too.  Let me know if you want to chat after the holidays
about the approach you want to be used for this feature.

Brian

Sent from iPad

On Dec 18, 2010, at 1:27 PM, Ian Holmes <ih...@be...> wrote:

> Thanks Brian!
>
> Custom tracks have always been on our wishlist since Day 1 but for various reasons have repeatedly been postponed. At one point we prototyped using TWiki - this code is still in the repo but not very mature. However, I suspect the quickest way to do this now would be via Galaxy. Do we have any Galaxy experts in the house..... Otherwise I may take a crack at it in the New Year.
>
> -Ian (by phone)
>
> On Dec 18, 2010, at 9:15 AM, "Brian O'Connor" <bri...@gm...> wrote:
>
>> Hey,
>>
>> Ian, great to hear you guys are working on this (and the release is
>> coming up too!).  I showed a version I hacked to get the touch to work
>> to a bunch of people over the last few weeks and everyone is really
>> impressed with this browser.  There's something about the iPad touch
>> interface + this browser that makes people smile!  So I'm glad to hear
>> the touch feature is being added to the official release.  If anyone
>> is interested in hacking this to work right now here's what I had to
>> add to the index.html.  This worked for me on a checkout from a couple
>> weeks ago...
>>
>> function init()
>> {
>>   document.addEventListener("touchstart", touchHandle, true);
>>   document.addEventListener("touchmove", touchHandle, true);
>>   document.addEventListener("touchend", touchHandle, true);
>>   document.addEventListener("touchcancel", touchHandle, true);
>>
>>   load();
>>   console.log("In init");
>> }
>>
>> init();
>>
>> But looking at the current demo HTML it looks like you just include
>> the touch.js file now...
>>
>> On a different topic, what is the plan for adding custom tracks to the
>> browser?  Right now I can add via importing a GFF file but are there
>> plans to provide a mechanism for end users to upload their custom
>> tracks?  I'm building a query engine (http://seqware.sf.net) and it
>> integrates with genome browsers by providing back a URL to load a
>> custom track with.  This has been a really convenient way to display
>> the results of queries in a genome browser like UCSC or IGV.  Is this
>> sort of functionality planned for JBrowse?
>>
>> --Brian
>>
>> On Sat, Dec 18, 2010 at 12:53 AM, Ian Holmes <ih...@be...> wrote:
>>> Hi Harry, thanks for your interest in JBrowse. You can now get to the
>>> touchscreen demo if you point your iPad here:
>>>
>>> http://jbrowse.org/ucsc/hg19/touch.html
>>>
>>> A few more details here:
>>> http://jbrowse.org/?page_id=11
>>>
>>> It should be present in the next release (which is imminent)
>>>
>>> All the best, Ian
>>>
>>> (cc'd Brenton, Ann & Brian, all of whom asked about this. NB the pinch-zoom
>>> is not yet implemented, though could probably be added fairly easily)
>>>
>>>
>>> On 9/16/10 7:25 AM, Harry Yoo wrote:
>>>>
>>>> Congratulations for the 1.1 release.
>>>>
>>>> I integrated the new version into our system and tested. It works
>>>> great!. But when I tested with iPad, it did not work and was not able to
>>>> find any place that works for iPad. Neither two demos at
>>>> http://jbrowse.org/?page_id=22 does not work as showed in the youtube
>>>> video.
>>>>
>>>> Where can I find a demo that I can work with my iPad?
>>>>
>>>> I also found a touchBrowse.js from the git branch, it seems like I need
>>>> to do some activation in addition to adding the js lib into the page. Is
>>>> that correct?
>>>>
>>>> Can you show how to make it work with iPad?
>>>>
>>>>
>>>> Thanks,
>>>> Harry Yoo
>>>>
>>>>
>>>>
>>>>
>>>> ------------------------------------------------------------------------------
>>>> Start uncovering the many advantages of virtual appliances
>>>> and start using them to simplify application deployment and
>>>> accelerate your shift to cloud computing.
>>>> http://p.sf.net/sfu/novell-sfdev2dev
>>>>
>>>>
>>>>
>>>> _______________________________________________
>>>> Gmod-ajax mailing list
>>>> Gmo...@li...
>>>> https://lists.sourceforge.net/lists/listinfo/gmod-ajax
>>>