Thanks Mitch,
I indeed think you should add it in the future.
I would also like to remind of the problem with "wrapped" features in GFF of
circular genomes, which are currently simply chopped off.
Keep up the good work,
Dave
On Tue, Sep 28, 2010 at 4:50 PM, Mitch Skinner
<mit...@be...>wrote:
> Since some data sources (chado, SeqFeature::Store) have IDs which aren't
> meaningful to users, JBrowse currently doesn't do searches on the ID field.
> In the future, we probably should, but for right now you can add an Alias
> tag to your GFF3, something like:
>
> NC_007488 GenBank gene 109368 110333 . - 1
> ID=RSP_3942;Dbxref=GeneID:3712061;Name=yurN;locus_tag=RSP_3942;Alias=RSP_3942
>
> And if you have more than one, you can make Alias be a comma-separated
> list:
>
> NC_007488 GenBank gene 109368 110333 . - 1
> ID=RSP_3942;Dbxref=GeneID:3712061;Name=yurN;locus_tag=RSP_3942;Alias=RSP_3942,foo,bar
>
> Regards,
> Mitch
>
>
>
> On 09/26/2010 01:53 AM, David Breimann wrote:
>
> Hello,
>
> I have a GFF3 file with lines like:
> NC_007488 GenBank gene 109368 110333 . - 1
> ID=RSP_3942;Dbxref=GeneID:3712061;Name=yurN;locus_tag=RSP_3942
> NC_007488 GenBank gene 108526 109371 . - 1
> ID=RSP_3943;Dbxref=GeneID:3712060;Name=yurM;locus_tag=RSP_3943
>
> I added it using --type=gene --autocomplete=all, then generated names.
> However, I can only look for genes using their names (e.g. yurN) and not
> their IDs or locus_tags.
>
>
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