Dear Ambrose,
Currently there is no way to produce differentially-colored quantitative
tracks exactly as you describe. A close approximation might be to
generate a separate feature track for the exons, and view this alongside
the quantitative track.
Best wishes,
Ian
ambrose andongabo (RRes-Roth) wrote:
> Hello Mitch,
>
> I have this data
>
> File one
> "186497660","26815000","343","0.492",
> "186497660","26615000","343","0.543",
> "186497660","26215000","343","0.133",
>
> File two
> "186497660","26815000","350","EX_pc-",
> "186497660","26615000","350","IN_pc+",
> "186497660","26215000","350","N
>
> The first file contains the data I used to designed my conservation track data. Well I passed the file and created the dot wig file. Now I intend to use the second file to color specific regions on my conservation track. There would be basically three main regions exons, introns and nothing represent in above lines as EX-pc- for exons, IN_pc for introns and N for nothing in that region.
>
> Looking into your wig-to-json.pl and wig2png.cc I can see that you use bgcolor and fgcolor. Is there any way I can modify these two files so that I can color my tracks depending on the value of each base.
>
> Cheers
>
> Ambrose
>
>
> Ambrose Andongabo Etenjeh
>
> Centre for Mathematical and Computational Biology
>
> Department of Biomathematics and Bioinformatics
>
> Rothamsted Research
>
> West Common, Harpenden, Hertfordshire, AL5 2JQ, UK.
>
> tel: 01582 763133 ext 2003
> fax: 01582 467907
> email: amb...@bb...
>
> Rothamsted Research is a company limited by guarantee, registered in England at the above address under the registration number 2393175 and a not for profit charity number 802038.
>
> ------------------------------------------------------------------------------
> Enter the BlackBerry Developer Challenge
> This is your chance to win up to $100,000 in prizes! For a limited time,
> vendors submitting new applications to BlackBerry App World(TM) will have
> the opportunity to enter the BlackBerry Developer Challenge. See full prize
> details at: http://p.sf.net/sfu/blackberry
> _______________________________________________
> Gmod-ajax mailing list
> Gmo...@li...
> https://lists.sourceforge.net/lists/listinfo/gmod-ajax
|
