JBrowse work is ongoing, but I'd like to highlight a few specific recent
changes, since they affect people who run JBrowse instances.
One big change was adding support for BED flat files; because of that, I
changed the name of gff-to-json.pl to flatfile-to-json.pl. Some of the
command line arguments for that script have also changed; see the usage
message for details.
Also, since a few people were confused about exactly how to run
generate-names.pl, that script no longer needs any command line
arguments. It now figures out what files to operate on by itself.
Regards,
Mitch
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