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Using the ffmpeg command line, you can merge a video and an audio stream in this way:
ffmpeg -i my_video.avi -i my_music.mp3 final.mp4
To get correct bitrate and image size (with the aspect ratio matching your original video), add the flags '-b' and '-s'.
For example, with a 16/9 video:
ffmpeg -i my_video.avi -i my_music.mp3 -s 512x288 -b 2500k final.mp4
or for higher quality:
ffmpeg -i my_video.avi -i my_music.mp3 -s 1024x576 -b 5000k final.mp4
See ffmpeg documentation for more details.
If you have been using an old version of GLMixer under OSX (e.g. 0.8), and have downloaded a newer version (0.9), you should remove the former application preferences because they are not compatible.
Remove the following files from your home directory:
~/Library/Preferences/glmixer.plist ~/Library/Preferences/fr.free.bhbn.GLMixer.plist
NB: the path may be different according to the locals of your system (e.g. under a French system, the Library folder is called 'Bibliotheque')
There is a known issue with the openGL driver option SYNC to VBLANK (synchronizing a refresh with the display frequency). Just disable this option in your drivers / display settings (GLMixer has its own synchronization to 60Hz refresh).