https://sourceforge.net/p/giira/wiki/Home/Recent changes to HomeenTue, 03 Sep 2013 11:57:49 -0000https://sourceforge.net/p/giira/wiki/Home/<div class="markdown_content"><pre>--- v1 +++ v2 @@ -1,8 +1,16 @@ -Welcome to your wiki! +Welcome to the wiki of GIIRA, a method for RNA-Seq driven gene finding incorporating ambiguous reads! +Please refer to the README.txt for general information and details on parameter settings. -This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage]. +GIIRA was designed and tested on a linux system and has the following minimim software requirements: -The wiki uses [Markdown](/p/giira/wiki/markdown_syntax/) syntax. +- Python +- Java +- either the CPLEX Optimizer () + or the GLPK solver () + +To install GIIRA, download and unpack the file GIIRA.zip, then the included GIIRA.jar is ready for use. + +An example dataset is included in the directory GIIRA/example/, whereas a usage description is provided in the README.txt. [[members limit=20]] [[download_button]] </pre> </div>Franziska ZickmannTue, 03 Sep 2013 11:57:49 -0000https://sourceforge.netb971d699feb91538561baf94689d40ac258e3567https://sourceforge.net/p/giira/wiki/Home/<div class="markdown_content"><p>Welcome to your wiki!</p> <p>This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: <span>[SamplePage]</span>.</p> <p>The wiki uses <a class="" href="/p/giira/wiki/markdown_syntax/">Markdown</a> syntax.</p> <p><h6>Project Members:</h6> <ul class="md-users-list"> <li><a href="/u/zickmannf/">Franziska Zickmann</a> (admin)</li> </ul><br /> </p><p><span class="download-button-51d6b4a885540d3c9d14117f" style="margin-bottom: 1em; display: block;"></span></p></div>Franziska ZickmannFri, 05 Jul 2013 11:57:29 -0000https://sourceforge.nete87a7170db314e36d5495f5bdb1c2026ab2a2106