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From: <sf-...@sn...> - 2013-04-10 19:50:27
|
Hi Don- My ExtUtils::CBuilder has 'use strict' and parses include_dirs as an array. This breaks when the Perl binding build with the error: Can't use string ("../../src") as an ARRAY ref while "strict refs" in use at /System/Library/Perl/5.10.0/ExtUtils/CBuilder/Base.pm line 92. I've attached a patch which fixes the issue and works correctly for Debian Sid, Ubuntu 12.04 and MacOS 10.6.8 Thanks, Seth diff --git a/bindings/perl/Build.PL.in b/bindings/perl/Build.PL.in index d4e5491..ee20e9c 100644 --- a/bindings/perl/Build.PL.in +++ b/bindings/perl/Build.PL.in @@ -42,7 +42,7 @@ my $build = $class->new( dist_version_from => "GetData.pm", extra_compiler_flags => ['@DEFS@', '-I@top_builddir@/src'], extra_linker_flags => ['-L@top_builddir@/src/.libs/', '-lgetdata'], - include_dirs => '@top_srcdir@/src', + include_dirs => ['@top_srcdir@/src'], license => 'lgpl', module_name => "GetData", pm_files => { 'GetData.pm' => 'lib/GetData.pm' }, |
From: D. V. W. <ge...@ke...> - 2013-03-19 20:22:28
|
On Tue, Mar 19, 2013 at 11:46:45AM -0400, Jaromir Capik wrote: > Hello. > > Please, fix the GetData changelog. > Last twelve records have incorrect year in the date. > > 2012 -> 2013 > > Thanks. I've fixed it. Thanks for the report. -dvw -- D. V. Wiebe ge...@ke... http://getdata.sourceforge.net/ |
From: Jaromir C. <jc...@re...> - 2013-03-19 15:46:53
|
Hello. Please, fix the GetData changelog. Last twelve records have incorrect year in the date. 2012 -> 2013 Thanks. Regards, Jaromir. -- Jaromir Capik Red Hat Czech, s.r.o. Software Engineer / BaseOS Email: jc...@re... Web: www.cz.redhat.com Red Hat Czech s.r.o., Purkynova 99/71, 612 45, Brno, Czech Republic IC: 27690016 |
From: <sf-...@sn...> - 2013-03-14 15:10:28
|
Thanks Don, that did it! -Seth On Wed, Mar 13, 2013 at 5:15 PM, D. V. Wiebe wrote: > On Wed, Mar 13, 2013 at 03:08:01PM -0700, D. V. Wiebe wrote: >> Thanks for the report. I'll investigate. >> >> I'll have to think about this a bit. Affixes have a tendency to confuse >> me. But, at first glance, it looks like there's at least a bug: the >> prefix should at least be stripped from the /REFERENCE line in the child >> dirfile. I also don't understand why the child dirfile is being >> rewritten, if all you've done is included it via gd_include() in the >> parent. > > I think it's just the bug that I suspected: affixes aren't being > stripped from /REFERENCE directives when they should be. I've fixed it > in SVN (rev 819). There will probably be a 0.8.4 out soon. (Apparently > putting out a release is a good way to solicit bug reports.) > > If you're impatient, the following patch should apply against both 0.8.2 > and 0.8.3: > > -- CUT -- CUT -- CUT -- > --- src/flush.c (revision 818) > +++ src/flush.c (revision 819) > @@ -792,7 +792,7 @@ > if (permissive || D->standards >= 6) > if (D->fragment[i].ref_name != NULL) { > fputs("/REFERENCE ", stream); > - _GD_StringEscapeise(stream, D->fragment[i].ref_name, 0, permissive, > + _GD_WriteFieldCode(D, stream, i, D->fragment[i].ref_name, permissive, > D->standards); > fputc('\n', stream); > } > -- CUT -- CUT -- CUT -- > > Cheers, > -dvw > -- > D. V. Wiebe > ge...@ke... > http://getdata.sourceforge.net/ |
From: D. V. W. <ge...@ke...> - 2013-03-14 00:15:41
|
On Wed, Mar 13, 2013 at 03:08:01PM -0700, D. V. Wiebe wrote: > Thanks for the report. I'll investigate. > > I'll have to think about this a bit. Affixes have a tendency to confuse > me. But, at first glance, it looks like there's at least a bug: the > prefix should at least be stripped from the /REFERENCE line in the child > dirfile. I also don't understand why the child dirfile is being > rewritten, if all you've done is included it via gd_include() in the > parent. I think it's just the bug that I suspected: affixes aren't being stripped from /REFERENCE directives when they should be. I've fixed it in SVN (rev 819). There will probably be a 0.8.4 out soon. (Apparently putting out a release is a good way to solicit bug reports.) If you're impatient, the following patch should apply against both 0.8.2 and 0.8.3: -- CUT -- CUT -- CUT -- --- src/flush.c (revision 818) +++ src/flush.c (revision 819) @@ -792,7 +792,7 @@ if (permissive || D->standards >= 6) if (D->fragment[i].ref_name != NULL) { fputs("/REFERENCE ", stream); - _GD_StringEscapeise(stream, D->fragment[i].ref_name, 0, permissive, + _GD_WriteFieldCode(D, stream, i, D->fragment[i].ref_name, permissive, D->standards); fputc('\n', stream); } -- CUT -- CUT -- CUT -- Cheers, -dvw -- D. V. Wiebe ge...@ke... http://getdata.sourceforge.net/ |
From: D. V. W. <ge...@ke...> - 2013-03-13 22:08:10
|
On Wed, Mar 13, 2013 at 01:22:49PM -0700, sf-...@sn... wrote: > Hi Don et al- > > I have some unexpected behavior in how getdata is handling reference > fields in dirfile fragments that are included with affixes. Here's > the scenario: > > 1) Create parent dirfile "./parent" > 2) Create raw field "time" in parent > 3) Set as reference with gd_reference(parent, "time") > 4) Create child dirfile "./parent/child" > 5) Create raw field "time" in child > 6) Set as reference with gd_reference(child, "time") > 7) Close child dirfile. > > At this point, both parent and child dirfiles have a time vector which > is set as reference as: > time RAW UINT64 1000 > /REFERENCE time > > 8) Include child with gd_include_affix(parent, "child/format", 0, > "prefix_", NULL, GD_IGNORE_DUPS|GD_IGNORE_REFS) > 9) Close the parent dirfile > > At this point, metadata are flushed and the parent format file is > correct but the child format file gets re-written such that the > /REFERENCE field changes to > /REFERENCE prefix_time > > I may be misinterpreting the effect of the include flags. If so, > please let me know how to correct this behavior. Ideally, I would > like to have the child fragments remain independently valid DIRFILEs. > > Thanks, > Seth Thanks for the report. I'll investigate. I'll have to think about this a bit. Affixes have a tendency to confuse me. But, at first glance, it looks like there's at least a bug: the prefix should at least be stripped from the /REFERENCE line in the child dirfile. I also don't understand why the child dirfile is being rewritten, if all you've done is included it via gd_include() in the parent. You should be able to keep a child dirfile as an independently valid dirfile, if they start out as one. If you can't, it's either a bug or a deficiency in the Dirfile Standards. In the short term, try protecting the metadata of the child dirfile after creating it and just before closing it (ie. between steps 6 and 7): 6.5) gd_alter_protection(child, GD_PROTECT_FORMAT, GD_ALL_FRAGMENTS); That should prevent rewriting of the child/format file by the parent, at the cost of not being able to modify its metadata. Cheers, -dvw -- D. V. Wiebe ge...@ke... http://getdata.sourceforge.net/ |
From: <sf-...@sn...> - 2013-03-13 20:23:06
|
Hi Don et al- I have some unexpected behavior in how getdata is handling reference fields in dirfile fragments that are included with affixes. Here's the scenario: 1) Create parent dirfile "./parent" 2) Create raw field "time" in parent 3) Set as reference with gd_reference(parent, "time") 4) Create child dirfile "./parent/child" 5) Create raw field "time" in child 6) Set as reference with gd_reference(child, "time") 7) Close child dirfile. At this point, both parent and child dirfiles have a time vector which is set as reference as: time RAW UINT64 1000 /REFERENCE time 8) Include child with gd_include_affix(parent, "child/format", 0, "prefix_", NULL, GD_IGNORE_DUPS|GD_IGNORE_REFS) 9) Close the parent dirfile At this point, metadata are flushed and the parent format file is correct but the child format file gets re-written such that the /REFERENCE field changes to /REFERENCE prefix_time I may be misinterpreting the effect of the include flags. If so, please let me know how to correct this behavior. Ideally, I would like to have the child fragments remain independently valid DIRFILEs. Thanks, Seth |
From: D. V. W. <ge...@ke...> - 2013-03-12 00:49:31
|
GetData-0.8.3 has been released. You may download it from your local SourceForge mirror: http://sourceforge.net/projects/getdata/files/getdata/0.8.3/ This is a bug-fix release, addressing bugs found after the release of 0.8.2. Most notably, it fixes bugs which prevented GetData from working on big-ended platforms, but it also fixes a few other minor bugs. Also, since we had them lying around, this release introduces the MATLAB bindings for GetData. They're still somewhat experimental at this point, and have not been well tested; use with caution. Full release notes are provided at the bottom of the release page linked above. Cheers, -dvw -- D. V. Wiebe ge...@ke... http://getdata.sourceforge.net/ |
From: D. V. W. <ge...@ke...> - 2013-03-08 01:22:35
|
On Thu, Mar 07, 2013 at 02:26:29PM -0500, Barth Netterfield wrote: > It is not clear (at least to me) what fragments are from the documentation. Yeah. The documentation isn't great. Which documentation have you been reading? Man pages? Webpages? "Fragment" started off as "format-file fragment". I tried calling fragments "format files", but I found that made the documentation confusing, too, since there's a distinction between "the file called 'format'" and "a file containg structural metatadata". Would calling them "metadata files" or something, be clearer? "Metafiles"? "Structure files"? "Catalogue files"? "Metadata" isn't terribly clear, either, since there's also "content metadata" (ie. /META fields). "Fragment" has also grown to refer to refer to the portion of a dirfile defined in one particular format file (and anything it /INCLUDES). In this case then it's a "dirfile fragment". Suggestions welcome, -dvw -- D. V. Wiebe ge...@ke... http://getdata.sourceforge.net/ |
From: Barth N. <bar...@ut...> - 2013-03-07 20:03:46
|
It is not clear (at least to me) what fragments are from the documentation. -- Barth Netterfield University of Toronto 416-845-0946 |
From: D. V. W. <ge...@ke...> - 2013-01-05 01:28:07
|
As part of Sourceforge's perpetual reinvention of itself, GetData's subversion repository URL has changed. The new repository root URL is: svn://svn.code.sourceforge.net/p/getdata/code for read-only access. (For write access use https:// or svn+ssh://). The web-browser has also moved; it is now here: http://sourceforge.net/p/getdata/code/ They seem to have re-created the repository from a dump; the UUID has changed. This means "svn switch --relocate" won't work. You'll have to do a fresh check-out. As a side-effect, apparently the commit email script that posted to the getdata-commits mailing list has gone AWOL. It looks like there's now a RSS feed, though, so maybe that's sufficient? http://sourceforge.net/p/getdata/code/feed/ If so, we might think about retiring the -commits list. I'll investigate fixing it. Apologies for the inconvenience, -dvw -- D. V. Wiebe ge...@ke... http://getdata.sourceforge.net/ |
From: D. V. W. <ge...@ke...> - 2013-01-05 01:05:42
|
Thanks. Committed. -dvw -- D. V. Wiebe ge...@ke... http://getdata.sourceforge.net/ |
From: Dinar V. <k0...@op...> - 2012-12-28 10:26:27
|
Hi, on powerpc, both 32 and 64bit tests are failing. Looks like a BigEndian issue. Please find log attached. Dinar, |
From: Dinar V. <k0...@op...> - 2012-12-28 10:20:29
|
Index: getdata-0.8.2/configure.ac =================================================================== --- getdata-0.8.2.orig/configure.ac +++ getdata-0.8.2/configure.ac @@ -326,7 +326,7 @@ echo "*** Checking host environment" echo AC_MSG_CHECKING([whether ${host} supports fast unaligned memory access]) case "${host}" in - i?86-*-*|powerpc-*-*|x86_64-*-*) gd_unaligned_ok=yes; + i?86-*-*|powerpc*-*|x86_64-*-*) gd_unaligned_ok=yes; AC_DEFINE([UNALIGNED_ACCESS_OK], [1], [Define to 1 if the platform supports fast unaligned memory access]) ;; |
From: D. V. W. <ge...@ke...> - 2012-12-13 01:01:48
|
GetData 0.8.2 has been released. It may be downloaded from your local SourceForge mirror: http://sourceforge.net/projects/getdata/files/getdata/0.8.2/ GetData 0.8.2 is a bug-fix release, correcting a few errors found after the release of 0.8.1: * trailink symlinks in paths no longer confuse the library * reading the first sample of an MPLEX mo longer causes an internal error Full release notes are provided at the bottom of the release page linked above. Cheers, -dvw -- D. V. Wiebe ge...@ke... http://getdata.sourceforge.net/ |
From: D. V. W. <ge...@ke...> - 2012-12-12 01:12:40
|
On Sat, Dec 08, 2012 at 05:37:33PM +1300, Steve Benton wrote: > Hi getdata, > > There seems to be a problem in 0.8.1 by which getdata doesn't open > symlinks to dirfiles. (This only applies at the top level; the path to > the dirfile can contain symlinks.) This was originally noticed with kst, > but I've reproduced it using dirfile2ascii, so it seems to be a getdata > error. Boooo. I see what's going on. You can work around it in 0.8.1 by adding a trailing slash (ie. "/data/test.lnk/" should work). This bug certainly exists in 0.8.0, but is likely masked by an unrelated segfault in most cases. Let me try testing it a bit more, but I think it's an easy fix. I'll put out a fix as soon as I can. Thanks for the report, -dvw -- D. V. Wiebe ge...@ke... http://getdata.sourceforge.net/ |
From: Steve B. <sb...@ph...> - 2012-12-08 04:55:01
|
Hi getdata, There seems to be a problem in 0.8.1 by which getdata doesn't open symlinks to dirfiles. (This only applies at the top level; the path to the dirfile can contain symlinks.) This was originally noticed with kst, but I've reproduced it using dirfile2ascii, so it seems to be a getdata error. For example: $ ls -l /data/ drwxr--r-- 9 sjb sjb 4096 Dec 7 13:47 etc drwxrwxrwx 9 sjb sjb 4096 Dec 7 13:47 rawdir lrwxrwxrwx 1 sjb sjb 33 Nov 30 15:54 test.lnk -> /data/rawdir/1354064663.y_0662673 $ ./dirfile2ascii --first-frame=0:30 /data/test.lnk INDEX IFEL_1_GY IFEL_2_GY GetData error: Not a dirfile: / $ ./dirfile2ascii --first-frame=0:30 /data/rawdir/1354064663.y_0662673 INDEX IFEL_1_GY IFEL_2_GY 0.000000 2013.265920 2013.265920 0.050000 2013.265920 2013.265920 0.100000 2013.265920 2013.265920 0.150000 2013.265920 2013.265920 0.200000 2013.265920 2013.265920 0.250000 2013.265920 2013.265920 0.300000 2013.265920 2013.265920 ... etc ... For now I have reverted to 0.7.3 and have not tested 0.8.0. Cheers, -Steve |
From: Steve B. <sb...@ph...> - 2012-10-23 16:58:22
|
I will also register a bug tracker, so that ubuntu reports (if any arise) can flow upstream. Is the correct behaviour just to email this list? On 12-10-22 12:40 PM, Steve Benton wrote: > Hi getdata, > > I've been revisiting ubuntu packaging, and some of this bears discussion. > > First, an update for the "Get GetData" part of the web page: ubuntu > releases newer than 12.04 Precise don't need to use a PPA, they will get > a version of the package pulled in from debian. The PPA will be for > pre-precise users, and for those that want more bleeding edge packages. > > Otherwise, the current use of the PPA ~stevebenton/kst2 is a little > tacky, and I would prefer to create a getdata team on launchpad, to make > the PPA ~getdata/ppa. > > I will also start using launchpad/bazaar to maintain the packaging > information, so anyone in the getdata team (on launchpad) will be > allowed to contribute, if anyone is so inclined. > > Launchpad also has a feature that allows automatic building and > publishing of daily-updated packages. This would require importing code > from the sourceforge svn server to a launchpad bazaar server, which is > also automated. However, for a mature project without many (any?) > bleeding-edge testers on ubuntu, I don't think this is necessary. > > Thoughts? > -Steve |
From: Steve B. <sb...@ph...> - 2012-10-22 17:04:59
|
Hi getdata, I've been revisiting ubuntu packaging, and some of this bears discussion. First, an update for the "Get GetData" part of the web page: ubuntu releases newer than 12.04 Precise don't need to use a PPA, they will get a version of the package pulled in from debian. The PPA will be for pre-precise users, and for those that want more bleeding edge packages. Otherwise, the current use of the PPA ~stevebenton/kst2 is a little tacky, and I would prefer to create a getdata team on launchpad, to make the PPA ~getdata/ppa. I will also start using launchpad/bazaar to maintain the packaging information, so anyone in the getdata team (on launchpad) will be allowed to contribute, if anyone is so inclined. Launchpad also has a feature that allows automatic building and publishing of daily-updated packages. This would require importing code from the sourceforge svn server to a launchpad bazaar server, which is also automated. However, for a mature project without many (any?) bleeding-edge testers on ubuntu, I don't think this is necessary. Thoughts? -Steve |
From: Sigurd K. N. <s.k...@as...> - 2012-10-18 20:06:49
|
Hi! I am trying to install getdata on a linux system with pyton 2.6, and while configure and make work fine, for make check, the two python-related checks fail. The system is: Linux glamdring 2.6.18-308.13.1.el5xen #1 SMP Tue Aug 21 19:13:16 EDT 2012 x86_64 x86_64 x86_64 GNU/Linux And the tests fail due to a segmentation fault immediately when trying to load the C extension. gdb shows that this happens in PyEval_GetFrame, and according to valgrind, an invalid jump is happening here. So probably something is seriously wrong with the shared library it is trying to load (i.e. pygetdata.so). Anyway, the output of make check tells me to contact this address, so here you go. Sigurd. |
From: D. V. W. <ge...@ke...> - 2012-08-21 00:15:40
|
GetData 0.8.1 has been released. It may be downloaded from your local SourceForge mirror: http://sourceforge.net/projects/getdata/files/getdata/0.8.1/ GetData 0.8.1 is a bug-fix release, correcting a few errors found after the release of 0.8.0, mostly involving memory errors. Full release notes are provided at the bottom of the release page linked above. Cheers, -dvw -- D. V. Wiebe ge...@ke... http://getdata.sourceforge.net/ |
From: Peter K. <syn...@gm...> - 2012-07-21 09:05:42
|
On 16.07.2012 23:33, D. V. Wiebe wrote: > > Yeah, I figured out how to run MSVC. I haven't checked whether it works > with kst-2, thought. I'd be happy if you could test that. > It builds fine with Kst, but I haven't tested if it works. But with all the tests on the getadata side I assume there are no problems >> One small issue: many tests fail when mingw is used with cmd.exe. > > How do you run mingw with cmd.exe? I managed to figure out how to get > cmake to make a Makefile which uses make-mingw32 (or whatever its > called). > Here you could download mingw-w64 GCC 4.7.1 for i686 or for 64 bit: sourceforge.net/projects/mingwbuilds/files/windows-host then add mingw/bin to PATH and call cmake -G"MinGW Makefiles" ..\trunk\cmake There is no make only 'mingw32-make' >> Can I commit attached patch? But I'm not sure if cygwin/msys which >> have 'rm' also set _WIN32. > > Please. I can test cygwin/msys if you'd like. If necessary, they can > be excluded via the preprocessor. OK committed. Peter |
From: D. V. W. <ge...@ke...> - 2012-07-16 21:33:22
|
On Sat, Jul 14, 2012 at 09:25:11PM +0200, Peter K?mmel wrote: > On 05.07.2012 02:56, D. V. Wiebe wrote: > >GetData 0.8.0 has been released. It may be downloaded from your local > >SourceForge mirror: > > > >http://sourceforge.net/projects/getdata/files/getdata/0.8.0/ > > > >GetData introduces Dirfile Standards Version 9. This new Standards > >Version adds the MPLEX and WINDOW field types, and field name aliases, > >the ability to modify field names provided in an /INCLUDE, and support > >for the zzip compression of data. > > > >Additionally, GetData 0.8.0 introduces the ability to do automatic > >sequential reads or writes, write support for gzip compressed Dirfiles, > >and various other improvements and bug fixes. This release also adds > >Perl to the list of supported bindings. > > > >Full release notes are provided at the bottom of the release page > >indicated above. > > > >Cheers, > >-dvw > > You also fixed the cmake files, great! Yeah, I figured out how to run MSVC. I haven't checked whether it works with kst-2, thought. I'd be happy if you could test that. > One small issue: many tests fail when mingw is used with cmd.exe. How do you run mingw with cmd.exe? I managed to figure out how to get cmake to make a Makefile which uses make-mingw32 (or whatever its called). > Can I commit attached patch? But I'm not sure if cygwin/msys which > have 'rm' also set _WIN32. Please. I can test cygwin/msys if you'd like. If necessary, they can be excluded via the preprocessor. Thanks, -dvw -- D. V. Wiebe ge...@ke... http://getdata.sourceforge.net/ |
From: Peter K. <syn...@gm...> - 2012-07-14 19:25:22
|
On 05.07.2012 02:56, D. V. Wiebe wrote: > GetData 0.8.0 has been released. It may be downloaded from your local > SourceForge mirror: > > http://sourceforge.net/projects/getdata/files/getdata/0.8.0/ > > GetData introduces Dirfile Standards Version 9. This new Standards > Version adds the MPLEX and WINDOW field types, and field name aliases, > the ability to modify field names provided in an /INCLUDE, and support > for the zzip compression of data. > > Additionally, GetData 0.8.0 introduces the ability to do automatic > sequential reads or writes, write support for gzip compressed Dirfiles, > and various other improvements and bug fixes. This release also adds > Perl to the list of supported bindings. > > Full release notes are provided at the bottom of the release page > indicated above. > > Cheers, > -dvw You also fixed the cmake files, great! One small issue: many tests fail when mingw is used with cmd.exe. Can I commit attached patch? But I'm not sure if cygwin/msys which have 'rm' also set _WIN32. Peter |
From: Christian T. <ct...@op...> - 2012-07-14 19:10:32
|
Am Mittwoch, 11. Juli 2012, 17:58:58 schrieb D. V. Wiebe: > One memory audit later, I think I've found the bug. I'll try to get a > new verious out soon with this fix a few other fixes people have found. > Thanks for the info. As a matter of fact I still get this error with gcc46 on openSUSE 12.1 with getdata-0.8.0. It was only "fixed" for the upcoming 12.2 release which uses gcc47. But today I tried the version from svn (rev 744) and there the test passes also for 12.1. So it seems you have fixed the bug. Kind regards Christian |