Affy huex-1_0-st exon array data in IGB

  • Susan Wilson

    Susan Wilson - 2009-02-06

    I have some chp files from the above arrays. When I load a chp file into IGB I get 3 tracks:

    2 tracks (+) and (-) have typical gff type format, with locations, length, etc., no score

    1 track is a graph track labeled "Scores <filename> (-)", it has 2 lines, are the 2 lines the (+) and (-) strand entries? Is this graph presentation in lieu of limitation of IGB which only shows the scores for gff type entries in the "Selection Info"? I'm thinking that's the case, but just want to be sure. Also, if it's true that these "joined" graphs are indeed the (+) and (-) strands, which is which?

    Susan Wilson
    University of New Mexico

    • Steve Chervitz

      Steve Chervitz - 2009-02-10

      Hi Susan,

      Please post your question on Affy's Exon and Gene Array Analysis forum here:

      Your question is more Affymetrix-centric rather than IGB-centric, and there is a larger group of users that could help you or profit from the discussion.



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