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GenomeRunner
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GenomeRunner Blog
Annotation and enrichment of Next-Gen sequencing data
Brought to you by:
mikhaildozmorov
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GenomeRunner / Blog: Editing "Database update"
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Due to many inquiries about the databases for GenomeRunner, I am currently working on compiling new version of genome annotation data. Now, the database will reflect the structure of the _trackDb_ table. The ENCODE data will be separated from UCSC annotations, and will have similar hierarchical organization, as in UCSC. That is, the data will be split into "data source/type" categories (like _BroadHistone_), and by cell types, as defined by [the ENCODE data coordination center at UCSC](https://genome.ucsc.edu/encode/cellTypes.html). The goal is to make it much easier to run cell type-specific analyses, and/or to focus on best quality (Tier 1) data. Keep in touch, the update is planned to be released before year's end. As always, I am grateful for everyone insights and suggestions.
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