#11 Create package la

[Susanta Tewari]

Packages in the old code need to to be totally restructured as in coalescent. They need to be based on model and data. The following packages would be created to wrap the existing classes.

la = linkage analysis
la.measure { Pvalue }
la.estimator.lhood { Genetic and Physical Lhood }
la.estimator { MLE, StandardError }
la.model {
TAB08 (Tewari, Arnold and Bhandarkar JBCB 2008) ( a model of recombination in N. crassa )
KSA00 (Kececioglu, J.; Shete, S. & Arnold, J. RECOM 2000) The hybridization experiment as described in the paper.
}
la.data {
Data
TAB08Data
KSA00Data
}