Re: [GeneX-dev] problem loading data with xml2db.pl

[Todd F. P. <tf...@nc...>]

Dear Robert:

This is due to a contact having no organization. To fix this problem, use
the Curation Tool to edit the contacts and fill in something (anything)
for any contacts that have a blank organization. Then save the experiment
and retry using xml2db. Alternatively, you can hand edit the xml file and
add the organization to the contacts.

Todd Peterson
NCGR GeneX Team

On Tue, 20 Nov 2001 rb...@mw... wrote:

> 
> Dear genex team,
> 
> I have a problem loading data with the xml2db.pl program into the genex
> database.
> I get the following messages:
> 
> Unrecognized escape \d passed through at
> /usr/lib/perl5/site_perl/5.6.0/i586-linux/XML/DOM.pm line 136.
> Using directory: ./.
> Reading GEML file: robtest4.xml...DONE.
> parsing contact elements...
> information already exists in table Contact.
> ...
> information already exists in table Contact.
> information already exists in table Contact.
> DBD::Pg::st execute failed: ERROR:  parser: parse error at or near "" at
> /usr/local/genex/bin/xml2db.pl line 1650.
> 7Contact: SELECT con_pk from Contact where contact_person = 'genex' AND
> at /usr/local/genex/bin/xml2db.pl line 1650.
> 
> Is this a problem due to the data base or the curation tool or are the DB
> and the tool versions incompatible or is it a user error?
> I would apreciate some help on this very much, since I feel quite stuck.
> 
> best regards Robert
> 
> 
>     Robert Bell
>     MWG Biotech AG
>     Anzinger Strasse 7
>     D-85560 Ebersberg; Germany
>     email : rb...@mw...
>     voice : +49-8092-8289 356
>     fax   : +49-8092-8289 310
> 
> 
> 
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