Re: [GeneX-dev] Tail (2)

[Harry M. <man...@ho...>]

Note that while we'll try to support Mac OSX, none of us have it running and so have not run thru the install on it obviously.  We're doing all this flying blind, so excuse the fumbling..

Nicolas Bertrand wrote:
> >> !! System Error:  @ line: 1829  ()
> >
> > This seems to be a problem with your R distribution; either R did not
> > install properly or the installation script can't find it on the PATH -
> > did your PATH environment variable include R's location?

> R is installed and is indeed in my PATH: I can launch R from anywhere.

OK - but is it in the PATH that the install-all script uses?

Is it in the 'PATH=' line of the 'Options.Reminders' file that keeps track of all the variables?

Can you execute the line from your shell script?

   R --version |head -1

it should give you something like:

R 1.3.1 (2001-08-31).


> >
> >> !! System Error: No such file or directory @ line: 2190
> >> (cd /Users/Shared/Downloads/GeneX-Server-1.0.4/CyberT-dist; R SHLIB
> >> runa.c)
> >
> > See above

Can you also excute the above line from your shell?
`cd /Users/Shared/Downloads/GeneX-Server-1.0.4/CyberT-dist; R SHLIB runa.c

If you don't have an appro compiler it might also fail, but I assume that you have a working gcc onboard.

> >> !! System Error: No such file or directory @ line: 2195
> >> (cd /Users/Shared/Downloads/GeneX-Server-1.0.4/CyberT-dist; cp hdarray
> >> runa.c
> >> runa.so /usr/local/genex/lib/R/library/hdarray/R/)

If the line above didn't work, this one will fail b/c you didn't compile the runa.so.


[stuff deleted]


> >> !! System Error: No such file or directory @ line: 2631
> >> (chmod ug+rw -R /usr/local/genex/rcluster/var/poqs)
> >
> > this looks like the installation of rcluster stopped prematurely.
> > Jason - is this a possibility of the mkdir failing like you mentioned
> > yesterday?

Did '/usr/local/genex/rcluster/var/poqs' get made correctly?

-- 
Cheers, Harry

Harry J Mangalam -- (949) 856 2847 (v&f) -- man...@ho... 
                    [plain text appreciated]