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Re: [GeneX-dev] Linux version of curation tool
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From: Jiaye Z. <ze...@in...> - 2001-03-27 00:40:00
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Hey Todd, =20 I added xar extension under Zip Compressed Data association, with mime t= ype application/x-zip-compressed. And I was able to get the save to disk opti= on=20 with netscape. I still think we should do this on the server side though,= =20 instead of having the each user do it. Jiaye Quoting Todd Peterson <tf...@nc...>: > Lonny and web guys >=20 > I tried saving screen gibberish with Netscape 4.75 and 4.51 and get an > exception in the Curation Tool when reading the resulting control-bundl= e > .xar file. It seems that Netscape saves the control bundle incorrectly. >=20 > A good control-bundle (using Explorer) is 48,697 bytes for all species. > Saved with Netscape, the file is 48,875 bytes. Messed with > preferences/applications and MIME types etc. until I was blue in the > face. > Netscape would not recognize the control bundle as a file to save to > disk. >=20 > Web guys, this used to work. What happened? >=20 > Todd >=20 > ----- Original Message ----- > From: "Lonny Montoya" <lon...@st...> > To: <and...@ah...> > Cc: <gen...@nc...>; <gen...@li...> > Sent: Monday, March 26, 2001 1:59 PM > Subject: [GeneX-dev] Linux version of curation tool >=20 >=20 > > Hi Erik, > > > > Here is what I think is going on with this: > > > > >---------- Forwarded message ---------- > > >Date: Mon, 26 Mar 2001 08:47:36 -0700 > > >From: Erik Andries <and...@ah...> > > >To: Lonny Montoya <lx...@nc...> > > >Subject: Re: Linux version of GeneX > > > > > >Lonnie Montoya, > > > > > >I download the latest version of the Linux Curation tool and > > >I got the following errors. See the attachment for the > > >session re-enactment. > > > > > >Erik Andries > > > > > > > > >These are the following messages when I type "go.sh" > > > > > >Font specified in font.properties not found > > [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] > > >Font specified in font.properties not found > > [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] > > >Font specified in font.properties not found > > [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] > > >Font specified in font.properties not found > > [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] > > >Font specified in font.properties not found > > [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] > > >Font specified in font.properties not found > > [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] > > >Font specified in font.properties not found > > [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] > > >Font specified in font.properties not found > > [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] > > >Font specified in font.properties not found > > [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] > > >Font specified in font.properties not found > > [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] > > >Font specified in font.properties not found > > [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] > > >Font specified in font.properties not found > > [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] > > >Font specified in font.properties not found > > [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] > > >Font specified in font.properties not found > > [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] > > >Font specified in font.properties not found > > [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] > > >Font specified in font.properties not found > > [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] > > >Font specified in font.properties not found > > [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] > > >Font specified in font.properties not found > > [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] > > >Font specified in font.properties not found > > [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] > > >Font specified in font.properties not found > > [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific] > > > > > > > These messages are because the jvm can't find a font it is looking > for. > It > > is possible that this was caused by using a copy of the curation tool > > created with another JDK besides Sun's. This shouldn't present a > problem > in > > the operation of the curation tool, however, it should just use the > default > > font instead. The fact that you can read the buttons and labels in > the > tool > > suggest that it is using the default font and these messages can be > ignored > > as they are not causing a problem. You can test whether this is the > problem > > by downloading Version 1.0 of the Curation Tool at: > > > > http://genex.ncgr.org/genex/download/curation_tool/linux/ > > > > This shouldn't happen with this version as it was created with the Su= n > JDK. > > If you are still getting these messages with Version 1.0, there may b= e > > something else going on. Let me know what the result is when you try > it. > > > > > > > >Then the main window pops. I hit the CREATE NEW EXPERIMENT SET icon > and > I > > enter new experiment set window. > > >I hit the READ CONTROL FILES icon and enter the window where I enter > my > > login name and password. > > >Suppose I do the test c=B7=B3ase (where I highlight all the > > >species for my control bundle). > > >I hit the SUBMIT REQUEST icon and then I get > > > > > >for a few seconds... > > > > > > "Curation Tool Download Generation Status Y > > > our Curation Tool download bundle is now being created. > > > Current run time is 0 seconds. > > > Output of the xml-write program:" > > > > > >and then... > > > > > >s=C1?(=E5Xt?=CB?K?P=AE=F8A??=E5t=A6av=D9=FEA~ sC=ACaCI_}=B8WY=C6=D7;= =DD?=B5=BB=FEC=E0=A1=ED=FAf5=D3=BB=BFM=DC > > >=1F<=08=A4f=06=11=F5]u=C2=13=B5=AFa=CB=C1=A7=E2,=DE=DB=E7&V=EB=ABks2= 5=D4=C5*"=D9=A7=B2=15s"..1=F7=03=BF=DA: > 3<SS=16=11=F5=E0,=D0=14=D02..=CC?E3.=F5=D4=B5=C9 > > i.=C7" U=12T=14d=F0 =EC=C5=F3r=17=D2Y=B6}=B1=D4.=BC7(=EB > > >=C5XvR=1F=04=8F mH=BAW"y=AF=F50=F6Y=AB > > >=DA=81:,tq3=9D~=EF=12.R&=EF:=B3"=A6?^=A7W[#=19Y"{=B0=1A=DBV=D0_<=19 > > "=AF(N=B9=CE=DF=EC2,=EA\3"=07Pkn=F0v??UL)?8?^=B6a%f)3)=ED1Y[*-=C3=A4|= x)+ > > =A2=FF=FE=AEU'F=A4=E5xN.-=E3[+=B5J=FDYbo\OO=C0=E4C<=E7U?>0=F1\=EA=AC=B1= ??=D5\?HI=F3ZW=C8J. > > >=EA=C1l=C2=D8=AE2P=E4=DA=E6=BA=C8r?=EB=B3-;<h?=DB=EA6=E8d=A5??=E7=CA= =AD??=B5iw?=DAf=C8=C5=B6=AB2=BE=A8&0=01=E9k =F1 > b=13=07=DD=1E-Q,=DC=1Bg=CE=DBZ > =DF=06=B0=08 > > '=C7.i=14 /J=3D=3D-"`=C1=1D=F0=D5L=A1=12j9=E39=F8_4g~6sJ=EEn2=C8=B7P=F4= !=DCb+5?!>? > > >=CAh~=10?&=D3=15A=ECC=06"f<=19'm"3=17fZP+=C1e=A9(=E2 Y=14=CCzI#=9D(;= =B7=F0L=E5=16?,so=A8=BA)=ADEO=B4=C4Ui=B1 Xl > > >=CBJ_=ABsP > > >=8D=18=16qtkL[wl=1B' > > =A1=07=EAT=13=E3X=BD=10=F7,?dV=C4=B7P@b=CA< > p=3D^=D7=A7=B8=AFV=F5^=D2=0FS.=B8Q=B4=AC=B7A5-=D0.=10=F6=CC=C97.7[=AA=E0= y=F2=D3=04j=19Y't=BDcd=8DS=C1<qB=EC=F2 > > =19=12d=A1=DA-=05=8F=AD@=04=A4!=F4* > > >T=12P*=A5=E5=05Y=B3v=08$=19=B7-=D3=C8=B8&H$=D0X=C21^i=1DF=B274?H=B0=F9= =08"=01)C=07 > > >=B6=19=D4P=B0=ED-Q)=D9yT=BF=EB=DC=8Dj-f=DCF=8D"=C7-=02 > > >=A5=C1"?=06%Y{=F2=1C=D2=E5-=06D=1A-=13q=EC=0E > > ,=DF~3=F5 > =DEX=C2-=1BlW=E1>~=81=C1=04=F5=FD>@"=ED=DA=066=15Q?=1E=F0$=E8=E1=C0=BB=90= =AA=B6=DA.d?u=D2=C1O:=FBP>=90=E6=ED=D0=1Bf<d-A=B6C=AF=DC=C8^=C3-=B8=E8~=B2= =E0 > > e=E1C<T?>IT=E4x=D2:=D6=06=F7=19Q>r=D1a,=A8Q=CAG=FAAQxt=11=B2}s=19=B3=DF= 6=B6=13=19=CC=1BI=B5=DA=E2=10#Y=CA&^LK=D8=B10=B5=05=0E=A5g>=C7BU > > ?=BF\=C3=D7xF"=BB=F6Q=F7=187=A6=EE=81=E2<o=19=B2^=18 > > > >=A3P=BD=1A=BA/Tb=E8T=A9=1C?~wU"=AE?=AB?=02=F2=CA2=B6?O=F2"0s=E7_=15=C8= =B6=04=DCntB`=D7F=14@=BFZ=FD=901=D2=A7=3D=08:=E0co=04dk=AB=02N=AE=DE=11?=BB= =1A > > =81=E3=03=FB=A8=02I=B6F3=C8r;=FC=02=16=C3=9D1pP=E4n3 >d=A4=E3=17=D8=0E= =D6U".=AB=B5=CE68T=FBpI=DAzV[=F8"E=08|=FA=8F=B56B9f=01=BF=A3q > > >=1B,b=14=8D=D0=ADhsa4(bGx=D0V=A1=9D8x=D6=AA=CDcL=A9R=0E=E7x=DC=1EB=01= ;Q=A9=A8j=DFN=F0,=3D=B2J w > =E7B=A3=A6Wh=C9s%L`=DB=C8=01-=17=C6?fg=04/`=11R > > >=E0=F0W.=B7E=F3P"=A8=F6=04=AC=ACkUF=90=AA5=D9,UoV=19=BB=EC=ECZ=03T1(= =B1=B3=1F=CEZ\-=B2=BFi=CD > > =BD=F1i=CE2=B6=D72=B1G=B3=D5=19=E4=1CN=CBH=F2=E8=EA=A1(=E4H.=178=C0=1E= =E2g=A5=D4=B1;`=C6=DB > >Dy=F9_=BF=BC=BD=C1x=F9=EC=FB=FF=ED=D3=F3_=DEf=8F/=BC=FF=D7>=D5=BF=BD=FF= C0=E7=FB=FF/ > > > 2=1E>>=DD=F8RY=D2Y=DAY=D6Y=DEYqy=FC=F8,5=F5)=FD=A9=FDi=FD=E9=FD9k=F2=F2= ?=DB=F3=D3O-=DF~=7F=F9=E6=AB=CB=CB=E5?_C,=FC=CA=C7=7F=C9=FF=1FY=FF=F66{|)= >=FF=F1=C6=F2=1F=F9=EF > > |=E6=FF/1>=FC=EE=11o > > > >=F7-=0F=0F=0Fx'=FAt=F9=F0=FBG4)=EF/=1F=BE~D?S=DF=0F=E8F=DF=D7u=BC=05=F4= 7=EF}Y=D5=A5?x?a=B0=CCn"^?k`V=F2TY@r=B0?y=B9K=D4L=D0=E0t=FC;=E4=F3=A5?p: > > *q?!=DB=C6?<%=3D!wo+?%5=D4v?=C8=F8*=FD?0w+=F6>D?=D2)>=C9=B9=F6=BDoMa7= =CE#{=E2?? =C8 =D6=E7}X=BC=A2=C5o?=DD=F1?t=CA=E3SPK > > >#=3D=F5=F9=C3?=C1=B4=C60=CF=DA)J?,=DB=A4j=C3=C4?V=B6j?=D5;Yi$^?W=E4a= =D1=D5I?o=B9=F1=B7\=A2?=DC=F3%=B0k=D4=AA=A4 "]=C0=EBS=B6=CF=B0=BB > > > > > >That's as far as I get the with the Linux version of the curation > tool. > Is > > there > > >a relationship between the messages I get when I type "go.sh" and th= e > > >crazy output when I SUBMIT REQUEST the control bundle? > > > > > > > This crazy output is what a binary file looks like in the browser > window. > > It isn't related to the font error messages. Netscape on Linux and > Unix > > often downloads a binary file to the browser window like this. I'm > not > sure > > why Nescape does this by default, but it is usually the source of som= e > > confusion. What you should do is wait for the file to finish > downloading > > and then click on "Save Page As" in the File menu to save the file.=20 > Save > > the file to the proper subdirectory (i.e. > > /home/lxm/ct100_usrlnx/data/control-bundle-downloaded) and then go > back to > > the curation tool to continue. Even though the binary file is > displayed > in > > the browser window like that, it still should save ok. Note that you > may > > have to create the control-bundle-downloaded subdirectory yourself. > > > > I hope this helps out. > > > > > > Lonny > > > > > > > > _______________________________________________ > > Genex-dev mailing list > > Gen...@li... > > http://lists.sourceforge.net/lists/listinfo/genex-dev > > >=20 >=20 >=20 > _______________________________________________ > Genex-dev mailing list > Gen...@li... > http://lists.sourceforge.net/lists/listinfo/genex-dev >=20 |
