Re: [GeneX-dev] Looking for LIMITs..

[Michael P. <mic...@ho...>]

Hi Jason,

This turns out to be a "never mind" relative to the database API.
It is a limit in the number of rows printed in the embperl pages
I am working with. I've found how to adjust that limit, so problem
goes away.

Getting started too early on Monday morning!!

Regards,

Michael Pear
 

----- Original Message ----- 
From: "Jason E. Stewart" <ja...@op...>
To: <gen...@li...>
Sent: Monday, March 19, 2001 8:34 AM
Subject: Re: [GeneX-dev] Looking for LIMITs..


> "Michael Pear" <mic...@ho...> writes:
> 
> > I'm using the Bio:Genex API to access V1 DB to retrieve
> > arraymeasurements for an experimentset with 262 arrays in it. I"m
> > hitting a limit of 100 arraymeasurement entries retrieved from the
> > database through Bio::Genex::ArrayMeasurement->get_all_objects, but
> > I've not set the LIMIT variable. Even if I set the LIMIT variable
> > explicitly to "1000", I'm still getting only 100 objects returned.
> 
> Hey Michael,
> 
> Sounds irritating... I checked the code, and the only places that
> LIMIT could be creeping into the picture is in Genex::undefined()
> (Genex.pm) or in ArrayMeasurement::get_all_objects(). In each case
> it's prefaced with an 'if defined $LIMIT', so if $LIMIT is not set, it
> shouldn't affect you....
> 
> What version of Genex.pm are you using?
> 
> $ perl -I/var/lib/genex/perl5 -MBio::Genex -e 'print $Bio::Genex::VERSION\n'
> 2.6.1
> 
> Can you send me a piece of the code that is doing the access?
> 
> Sorry I can't be more informative,
> jas.
> 
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