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From: <ja...@op...> - 2001-01-26 10:30:02
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Hey, View the release notes: http://sourceforge.net/project/shownotes.php?release_id=21940 Download the tarball: http://download.sourceforge.net/genex/Bio-Genex-2.5.0.tar.gz But whatever you do, read the README: Configuring ----------- For Genex.pm to be useful, you must have already installed a working GeneX server on your system. In order for Genex.pm to properly configure itself, it must find the Genex/Config.pm that was installed with the rest of the GeneX perl modules. Since the Genex/Config.pm was likely installed in the private Genex lib directory, you will need to be sure that it is in your Perl lib path. To ensure this, include the GeneX lib dir in your PERL5LIB: $ export PERL5LIB=/var/lib/genex/perl5:$PERL5LIB Substitute in the proper directory for /var/lib/genex/perl5 Changes since 2.4.0: - db2xml.pl: caching of experiment sets and control-bunldes implemented now has --no_cache option to avoid using or setting cache --user/--password now optional unless --authenticate is specified Removed citationlink() Fixed aweful citation bug that never showed up, because citationlink table was never populated - Fixed API for get_objects() by creating new method get_all_objects(). - fixed bug in check_password() - XMLUtils.pm.in Added new framework for implementing class-specific XML output. Implemented output for Chromosome, and partial output for Species (still needs USF for completeness). - DBUtils.pm.in (Repository): Added new assert_* methods: assert_species assert_protocol assert_scanner assert_software assert_spotter assert_array assert_experiment check_password() no longer dies() with a bad password, instead it returns undef - UserSequenceFeature, ExperimentSet and ArrayMeasurement now have provider_con_fk() and provider_con_obj() methods post_process() no longer automatically derefences the con_obj() from a us_obj, it first tests the definedness - ExternalDatabase: Fixed full name - list_tables.pl.in: Fixed name of HTML title Enjoy, jas. |