Re: [GeneX-dev] Re: CanonicalSequenceFeature is missing...

[<ja...@op...>]

"Michael Pear" <mic...@ho...> writes:

> I missed the Release Notes for the DB...I see them on sourceforge
> now.

Not your fault, since the changes were in the Genex.pm API, I should
have indicated it there. I have just started using release notes for
the Server, though, so I'm just learning how I should do it.

> I did a quick check by doing an rgrep on the install tree and there
> are still a lot of references to CanonicalSequenceFeature in xml2db.pl
> as well, so even if the curation tool can handle it, having nothing there
> may break submission using xml2db.pl

Yes, Jiaye just found this out yesterday when he and I worked on the
XML API. He will have that fixed in a day or two.

I have removed the references to CSF in db2xml, and it prints out, but
I've found a rather troubling bug in the USF_ExternalDBLink class that
looks like another nasty linking table bug (did I mention that linking
tables give me gas??). I'm working to crack that one right now.

The good news is, as soon as I fix this, you will only need to update
your Genex.pm installation. As a stand-alone perl module, it uses your
already installed Config.pm to configure and install itself, so the
upgrade should be easy. 

I hope to post it later tonight to sourceforge.

Your a great help, Michael, and a good sport,
jas.