[GeneX-dev] Re: CanonicalSequenceFeature is missing...

[<ja...@op...>]

"Michael Pear" <mic...@ho...> writes:

> I tried to download a control bundle on my new installation, but
> db2xml.pl failed because it couldn't find
> CanonicalSequenceFeature.pm. I don't see it or anything in
> Genex/CanonicalSequenceFeature in the install tree. I no longer find
> this table in the database either. What's up?

This was in the Release Notes for DB v0.8.1, but for some reason, I
didn't include it in the Server install notes:

From the release notes:

* All tables related to Canonical Sequence Features were removed
  (CanonicalSequenceFeature, CSF_ExternalDBLink, UserCanonicalLink,
  RelatedCSF) 
* the two CSF related columns in UserSequenceFeature were removed
  (putative_csf_fk, nonunique_flag)

And it looks like *I* didn't debug things enough :-(

CSF was supposed to go away a month ago, it has always been an
unsupported feature, and since it was never really broken, it never
made it high enough on my priority to remove. I did it last release.

Todd and/or Lonny. Will the CT break without CSF in the control
bundle? Should I just output a blank CSF section for now?

Mea culpa, mea culpa,
jas.