genex-cvs-commit — CVS commit messages

[Genex-cvs-commit] genex-server/Genex/HotSpots HotSpots.pm,1.32,1.33

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/HotSpots
In directory sc8-pr-cvs1:/tmp/cvs-serv12879/HotSpots

Modified Files:
	HotSpots.pm 
Log Message:
new files

Index: HotSpots.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/HotSpots/HotSpots.pm,v
retrieving revision 1.32
retrieving revision 1.33
diff -C2 -d -r1.32 -r1.33
*** HotSpots.pm	16 Apr 2003 23:23:49 -0000	1.32
--- HotSpots.pm	23 Apr 2003 23:58:33 -0000	1.33
***************
*** 55,72 ****
  ;
   $FKEYS = {
-           'es_obj' => bless( {
-                              'fkey_name' => 'es_obj',
-                              'pkey_name' => 'es_pk',
-                              'can_self_reference' => 'false',
-                              'fkey_type' => 'LINKING_TABLE_OO',
-                              'table_name' => 'ExperimentSet'
-                            }, 'Bio::Genex::Fkey' ),
            'rep_obj' => bless( {
!                               'fkey_name' => 'rep_obj',
!                               'pkey_name' => 'rep_pk',
!                               'can_self_reference' => 'false',
!                               'fkey_type' => 'LINKING_TABLE_OO',
!                               'table_name' => 'Reporter'
!                             }, 'Bio::Genex::Fkey' )
          }
  ;
--- 55,72 ----
  ;
   $FKEYS = {
            'rep_obj' => bless( {
!                                 'fkey_type' => 'LINKING_TABLE_OO',
!                                 'table_name' => 'Reporter',
!                                 'fkey_name' => 'rep_obj',
!                                 'can_self_reference' => 'false',
!                                 'pkey_name' => 'rep_pk'
!                               }, 'Bio::Genex::Fkey' ),
!           'es_obj' => bless( {
!                                'fkey_type' => 'LINKING_TABLE_OO',
!                                'table_name' => 'ExperimentSet',
!                                'fkey_name' => 'es_obj',
!                                'can_self_reference' => 'false',
!                                'pkey_name' => 'es_pk'
!                              }, 'Bio::Genex::Fkey' )
          }
  ;
***************
*** 78,95 ****
  
    $COLUMN2NAME  = {
-           'threshold_type' => 'threshold_type',
            'es_fk' => 'es_fk',
            'rep_fk' => 'rep_fk'
          }
  ;
    $NAME2COLUMN  = {
-           'threshold_type' => 'threshold_type',
            'es_fk' => 'es_fk',
            'rep_fk' => 'rep_fk'
          }
  ;
    $FKEY_OBJ2RAW = {
!           'es_obj' => 'es_fk',
!           'rep_obj' => 'rep_fk'
          }
  ;
--- 78,95 ----
  
    $COLUMN2NAME  = {
            'es_fk' => 'es_fk',
+           'threshold_type' => 'threshold_type',
            'rep_fk' => 'rep_fk'
          }
  ;
    $NAME2COLUMN  = {
            'es_fk' => 'es_fk',
+           'threshold_type' => 'threshold_type',
            'rep_fk' => 'rep_fk'
          }
  ;
    $FKEY_OBJ2RAW = {
!           'rep_obj' => 'rep_fk',
!           'es_obj' => 'es_fk'
          }
  ;

[Genex-cvs-commit] genex-server/Genex/Hardware Hardware.pm,1.1,1.2

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/Hardware
In directory sc8-pr-cvs1:/tmp/cvs-serv12879/Hardware

Modified Files:
	Hardware.pm 
Log Message:
new files

Index: Hardware.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/Hardware/Hardware.pm,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** Hardware.pm	16 Apr 2003 23:23:49 -0000	1.1
--- Hardware.pm	23 Apr 2003 23:58:33 -0000	1.2
***************
*** 58,84 ****
   $FKEYS = {
            'producer_con_obj' => bless( {
!                                        'fkey_name' => 'producer_con_obj',
!                                        'can_self_reference' => 'false',
!                                        'pkey_name' => 'con_pk',
!                                        'fkey_type' => 'ONE_TO_ONE_OO',
!                                        'table_name' => 'Contact'
!                                      }, 'Bio::Genex::Fkey' )
          }
  ;
  
    $COLUMN2NAME  = {
-           'make' => 'Make',
            'model_description' => 'Model Description',
            'producer_con_fk' => 'Protocol Producer',
!           'model' => 'Model',
!           'type' => 'Type'
          }
  ;
    $NAME2COLUMN  = {
            'Type' => 'type',
-           'Protocol Producer' => 'producer_con_fk',
            'Make' => 'make',
            'Model' => 'model',
!           'Model Description' => 'model_description'
          }
  ;
--- 58,84 ----
   $FKEYS = {
            'producer_con_obj' => bless( {
!                                          'table_name' => 'Contact',
!                                          'fkey_type' => 'ONE_TO_ONE_OO',
!                                          'fkey_name' => 'producer_con_obj',
!                                          'can_self_reference' => 'false',
!                                          'pkey_name' => 'con_pk'
!                                        }, 'Bio::Genex::Fkey' )
          }
  ;
  
    $COLUMN2NAME  = {
            'model_description' => 'Model Description',
            'producer_con_fk' => 'Protocol Producer',
!           'type' => 'Type',
!           'make' => 'Make',
!           'model' => 'Model'
          }
  ;
    $NAME2COLUMN  = {
+           'Model Description' => 'model_description',
            'Type' => 'type',
            'Make' => 'make',
            'Model' => 'model',
!           'Protocol Producer' => 'producer_con_fk'
          }
  ;

[Genex-cvs-commit] genex-server/Genex/GroupLink GroupLink.pm,1.32,1.33

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/GroupLink
In directory sc8-pr-cvs1:/tmp/cvs-serv12879/GroupLink

Modified Files:
	GroupLink.pm 
Log Message:
new files

Index: GroupLink.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/GroupLink/GroupLink.pm,v
retrieving revision 1.32
retrieving revision 1.33
diff -C2 -d -r1.32 -r1.33
*** GroupLink.pm	16 Apr 2003 23:23:48 -0000	1.32
--- GroupLink.pm	23 Apr 2003 23:58:33 -0000	1.33
***************
*** 55,71 ****
   $FKEYS = {
            'groupname_obj' => bless( {
!                                     'fkey_name' => 'groupname_obj',
!                                     'pkey_name' => 'name',
!                                     'can_self_reference' => 'false',
!                                     'fkey_type' => 'LINKING_TABLE_OO',
!                                     'table_name' => 'GroupSec'
!                                   }, 'Bio::Genex::Fkey' ),
            'username_obj' => bless( {
!                                    'fkey_name' => 'username_obj',
!                                    'pkey_name' => 'username',
!                                    'can_self_reference' => 'false',
!                                    'fkey_type' => 'LINKING_TABLE_OO',
!                                    'table_name' => 'UserSec'
!                                  }, 'Bio::Genex::Fkey' )
          }
  ;
--- 55,71 ----
   $FKEYS = {
            'groupname_obj' => bless( {
!                                       'fkey_type' => 'LINKING_TABLE_OO',
!                                       'table_name' => 'GroupSec',
!                                       'fkey_name' => 'groupname_obj',
!                                       'can_self_reference' => 'false',
!                                       'pkey_name' => 'name'
!                                     }, 'Bio::Genex::Fkey' ),
            'username_obj' => bless( {
!                                      'fkey_type' => 'LINKING_TABLE_OO',
!                                      'table_name' => 'UserSec',
!                                      'fkey_name' => 'username_obj',
!                                      'can_self_reference' => 'false',
!                                      'pkey_name' => 'username'
!                                    }, 'Bio::Genex::Fkey' )
          }
  ;
***************
*** 77,87 ****
  
    $COLUMN2NAME  = {
!           'groupname' => 'Group Name',
!           'username' => 'User Name'
          }
  ;
    $NAME2COLUMN  = {
!           'Group Name' => 'groupname',
!           'User Name' => 'username'
          }
  ;
--- 77,87 ----
  
    $COLUMN2NAME  = {
!           'username' => 'User Name',
!           'groupname' => 'Group Name'
          }
  ;
    $NAME2COLUMN  = {
!           'User Name' => 'username',
!           'Group Name' => 'groupname'
          }
  ;

[Genex-cvs-commit] genex-server/Genex/GenexAdmin GenexAdmin.pm,1.20,1.21

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/GenexAdmin
In directory sc8-pr-cvs1:/tmp/cvs-serv12879/GenexAdmin

Modified Files:
	GenexAdmin.pm 
Log Message:
new files

Index: GenexAdmin.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/GenexAdmin/GenexAdmin.pm,v
retrieving revision 1.20
retrieving revision 1.21
diff -C2 -d -r1.20 -r1.21
*** GenexAdmin.pm	16 Apr 2003 23:23:48 -0000	1.20
--- GenexAdmin.pm	23 Apr 2003 23:58:33 -0000	1.21
***************
*** 52,78 ****
   $FKEYS = {
            'audit_obj' => bless( {
!                                 'fkey_name' => 'audit_obj',
!                                 'can_self_reference' => 'false',
!                                 'pkey_name' => 'audit_pk',
!                                 'fkey_type' => 'ONE_TO_ONE_OO',
!                                 'table_name' => 'Audit'
!                               }, 'Bio::Genex::Fkey' )
          }
  ;
  
    $COLUMN2NAME  = {
            'audit_fk' => 'Audit',
            'version_date' => 'Date of Version Creation',
!           'description' => 'Description',
!           'ga_pk' => 'Accession Number',
!           'version_number' => 'DB Version'
          }
  ;
    $NAME2COLUMN  = {
            'Date of Version Creation' => 'version_date',
            'Accession Number' => 'ga_pk',
!           'DB Version' => 'version_number',
!           'Audit' => 'audit_fk',
!           'Description' => 'description'
          }
  ;
--- 52,78 ----
   $FKEYS = {
            'audit_obj' => bless( {
!                                   'table_name' => 'Audit',
!                                   'fkey_type' => 'ONE_TO_ONE_OO',
!                                   'fkey_name' => 'audit_obj',
!                                   'can_self_reference' => 'false',
!                                   'pkey_name' => 'audit_pk'
!                                 }, 'Bio::Genex::Fkey' )
          }
  ;
  
    $COLUMN2NAME  = {
+           'description' => 'Description',
+           'version_number' => 'DB Version',
            'audit_fk' => 'Audit',
            'version_date' => 'Date of Version Creation',
!           'ga_pk' => 'Accession Number'
          }
  ;
    $NAME2COLUMN  = {
+           'Description' => 'description',
+           'Audit' => 'audit_fk',
            'Date of Version Creation' => 'version_date',
            'Accession Number' => 'ga_pk',
!           'DB Version' => 'version_number'
          }
  ;

[Genex-cvs-commit] genex-server/Genex/FeatureExtractionSoftware FeatureExtractionSoftware.pm,1.7,1.8

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/FeatureExtractionSoftware
In directory sc8-pr-cvs1:/tmp/cvs-serv12879/FeatureExtractionSoftware

Modified Files:
	FeatureExtractionSoftware.pm 
Log Message:
new files

Index: FeatureExtractionSoftware.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/FeatureExtractionSoftware/FeatureExtractionSoftware.pm,v
retrieving revision 1.7
retrieving revision 1.8
diff -C2 -d -r1.7 -r1.8
*** FeatureExtractionSoftware.pm	16 Apr 2003 23:23:48 -0000	1.7
--- FeatureExtractionSoftware.pm	23 Apr 2003 23:58:32 -0000	1.8
***************
*** 52,78 ****
   $FKEYS = {
            'qd_obj' => bless( {
!                              'fkey_name' => 'qd_obj',
!                              'can_self_reference' => 'false',
!                              'pkey_name' => 'qd_pk',
!                              'fkey_type' => 'ONE_TO_ONE_OO',
!                              'table_name' => 'QuantitationTypeDimension'
!                            }, 'Bio::Genex::Fkey' )
          }
  ;
  
    $COLUMN2NAME  = {
            'data_end_regex' => 'Data End Regular Expression',
-           'data_start_regex2' => 'Data Start Regular Expression 2',
            'feature_identifier_string' => 'Feature Identifier String',
            'data_start_regex1' => 'Data Start Regular Expression 1',
!           'qd_fk' => 'Quantitation Type Dimension'
          }
  ;
    $NAME2COLUMN  = {
-           'Data End Regular Expression' => 'data_end_regex',
            'Data Start Regular Expression 1' => 'data_start_regex1',
-           'Feature Identifier String' => 'feature_identifier_string',
            'Data Start Regular Expression 2' => 'data_start_regex2',
!           'Quantitation Type Dimension' => 'qd_fk'
          }
  ;
--- 52,78 ----
   $FKEYS = {
            'qd_obj' => bless( {
!                                'table_name' => 'QuantitationTypeDimension',
!                                'fkey_type' => 'ONE_TO_ONE_OO',
!                                'fkey_name' => 'qd_obj',
!                                'can_self_reference' => 'false',
!                                'pkey_name' => 'qd_pk'
!                              }, 'Bio::Genex::Fkey' )
          }
  ;
  
    $COLUMN2NAME  = {
+           'qd_fk' => 'Quantitation Type Dimension',
            'data_end_regex' => 'Data End Regular Expression',
            'feature_identifier_string' => 'Feature Identifier String',
            'data_start_regex1' => 'Data Start Regular Expression 1',
!           'data_start_regex2' => 'Data Start Regular Expression 2'
          }
  ;
    $NAME2COLUMN  = {
            'Data Start Regular Expression 1' => 'data_start_regex1',
            'Data Start Regular Expression 2' => 'data_start_regex2',
!           'Quantitation Type Dimension' => 'qd_fk',
!           'Data End Regular Expression' => 'data_end_regex',
!           'Feature Identifier String' => 'feature_identifier_string'
          }
  ;

[Genex-cvs-commit] genex-server/Genex/Feature Feature.pm,1.15,1.16

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/Feature
In directory sc8-pr-cvs1:/tmp/cvs-serv12879/Feature

Modified Files:
	Feature.pm 
Log Message:
new files

Index: Feature.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/Feature/Feature.pm,v
retrieving revision 1.15
retrieving revision 1.16
diff -C2 -d -r1.15 -r1.16
*** Feature.pm	16 Apr 2003 23:23:47 -0000	1.15
--- Feature.pm	23 Apr 2003 23:58:32 -0000	1.16
***************
*** 77,140 ****
  ;
   $FKEYS = {
-           'ad_obj' => bless( {
-                              'fkey_name' => 'ad_obj',
-                              'can_self_reference' => 'false',
-                              'pkey_name' => 'ad_pk',
-                              'fkey_type' => 'LOOKUP_TABLE_OO',
-                              'table_name' => 'ArrayDesign'
-                            }, 'Bio::Genex::Fkey' ),
            'rep_obj' => bless( {
!                               'fkey_name' => 'rep_obj',
!                               'can_self_reference' => 'false',
!                               'pkey_name' => 'rep_pk',
!                               'fkey_type' => 'ONE_TO_ONE_OO',
!                               'table_name' => 'Reporter'
!                             }, 'Bio::Genex::Fkey' )
          }
  ;
  
    $COLUMN2NAME  = {
!           'grid_image_location' => 'Grid Image Location',
!           'y_image_location' => 'Y Image Location',
            'feature_type' => 'Feature Type',
-           'print_sequence' => 'Print Sequence',
-           'source_visit' => 'Source Visit',
-           'sub_sequence_start' => 'Sub-sequence Start',
-           'pin_identifier' => 'Pin',
-           'grid_row_image_location' => 'Grid Row Number',
-           'feature_pk' => 'Accession Number',
            'x_image_location' => 'X Image Location',
!           'feature_identifier' => 'Feature Identifier',
            'rep_fk' => 'Sequence Feature',
            'sub_sequence_end' => 'Sub-sequence End',
!           'feature_description' => 'Feature Description',
            'grid_col_image_location' => 'Grid Column Number',
            'ad_fk' => 'Array Layout',
!           'feature_concentration' => 'Feature Concentration'
          }
  ;
    $NAME2COLUMN  = {
-           'Grid Row Number' => 'grid_row_image_location',
-           'Y Image Location' => 'y_image_location',
-           'Feature Concentration' => 'feature_concentration',
-           'Feature Identifier' => 'feature_identifier',
-           'Source Visit' => 'source_visit',
-           'Print Sequence' => 'print_sequence',
            'Grid Image Location' => 'grid_image_location',
!           'Pin' => 'pin_identifier',
!           'X Image Location' => 'x_image_location',
            'Sub-sequence Start' => 'sub_sequence_start',
            'Feature Description' => 'feature_description',
!           'Sub-sequence End' => 'sub_sequence_end',
            'Accession Number' => 'feature_pk',
!           'Grid Column Number' => 'grid_col_image_location',
            'Array Layout' => 'ad_fk',
!           'Feature Type' => 'feature_type',
!           'Sequence Feature' => 'rep_fk'
          }
  ;
    $FKEY_OBJ2RAW = {
!           'ad_obj' => 'ad_fk',
!           'rep_obj' => 'rep_fk'
          }
  ;
--- 77,140 ----
  ;
   $FKEYS = {
            'rep_obj' => bless( {
!                                 'table_name' => 'Reporter',
!                                 'fkey_type' => 'ONE_TO_ONE_OO',
!                                 'fkey_name' => 'rep_obj',
!                                 'can_self_reference' => 'false',
!                                 'pkey_name' => 'rep_pk'
!                               }, 'Bio::Genex::Fkey' ),
!           'ad_obj' => bless( {
!                                'table_name' => 'ArrayDesign',
!                                'fkey_type' => 'LOOKUP_TABLE_OO',
!                                'fkey_name' => 'ad_obj',
!                                'can_self_reference' => 'false',
!                                'pkey_name' => 'ad_pk'
!                              }, 'Bio::Genex::Fkey' )
          }
  ;
  
    $COLUMN2NAME  = {
!           'feature_description' => 'Feature Description',
            'feature_type' => 'Feature Type',
            'x_image_location' => 'X Image Location',
!           'feature_concentration' => 'Feature Concentration',
!           'source_visit' => 'Source Visit',
            'rep_fk' => 'Sequence Feature',
            'sub_sequence_end' => 'Sub-sequence End',
!           'print_sequence' => 'Print Sequence',
!           'grid_image_location' => 'Grid Image Location',
!           'feature_pk' => 'Accession Number',
!           'feature_identifier' => 'Feature Identifier',
!           'sub_sequence_start' => 'Sub-sequence Start',
!           'y_image_location' => 'Y Image Location',
!           'grid_row_image_location' => 'Grid Row Number',
            'grid_col_image_location' => 'Grid Column Number',
            'ad_fk' => 'Array Layout',
!           'pin_identifier' => 'Pin'
          }
  ;
    $NAME2COLUMN  = {
            'Grid Image Location' => 'grid_image_location',
!           'Sub-sequence End' => 'sub_sequence_end',
!           'Feature Type' => 'feature_type',
!           'Y Image Location' => 'y_image_location',
            'Sub-sequence Start' => 'sub_sequence_start',
            'Feature Description' => 'feature_description',
!           'Source Visit' => 'source_visit',
!           'Sequence Feature' => 'rep_fk',
            'Accession Number' => 'feature_pk',
!           'Feature Concentration' => 'feature_concentration',
!           'Print Sequence' => 'print_sequence',
!           'X Image Location' => 'x_image_location',
            'Array Layout' => 'ad_fk',
!           'Grid Column Number' => 'grid_col_image_location',
!           'Pin' => 'pin_identifier',
!           'Grid Row Number' => 'grid_row_image_location',
!           'Feature Identifier' => 'feature_identifier'
          }
  ;
    $FKEY_OBJ2RAW = {
!           'rep_obj' => 'rep_fk',
!           'ad_obj' => 'ad_fk'
          }
  ;

[Genex-cvs-commit] genex-server/Genex/ExperimentFactors ExperimentFactors.pm,1.33,1.34

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/ExperimentFactors
In directory sc8-pr-cvs1:/tmp/cvs-serv12879/ExperimentFactors

Modified Files:
	ExperimentFactors.pm 
Log Message:
new files

Index: ExperimentFactors.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/ExperimentFactors/ExperimentFactors.pm,v
retrieving revision 1.33
retrieving revision 1.34
diff -C2 -d -r1.33 -r1.34
*** ExperimentFactors.pm	16 Apr 2003 23:23:47 -0000	1.33
--- ExperimentFactors.pm	23 Apr 2003 23:58:32 -0000	1.34
***************
*** 19,25 ****
  use Class::ObjectTemplate::DB 0.27;
  use Bio::Genex::Audit;
  use Bio::Genex::TL_FactorValues;
  use Bio::Genex::ExperimentSet;
- use Bio::Genex::AM_FactorValues;
  
  
--- 19,25 ----
  use Class::ObjectTemplate::DB 0.27;
  use Bio::Genex::Audit;
+ use Bio::Genex::AM_FactorValues;
  use Bio::Genex::TL_FactorValues;
  use Bio::Genex::ExperimentSet;
  
  
***************
*** 61,132 ****
  ;
   $FKEYS = {
-           'es_obj' => bless( {
-                              'fkey_name' => 'es_obj',
-                              'can_self_reference' => 'false',
-                              'pkey_name' => 'es_pk',
-                              'fkey_type' => 'MANY_TO_ONE_OO',
-                              'table_name' => 'ExperimentSet'
-                            }, 'Bio::Genex::Fkey' ),
-           'audit_obj' => bless( {
-                                 'fkey_name' => 'audit_obj',
-                                 'can_self_reference' => 'false',
-                                 'pkey_name' => 'audit_pk',
-                                 'fkey_type' => 'ONE_TO_ONE_OO',
-                                 'table_name' => 'Audit'
-                               }, 'Bio::Genex::Fkey' ),
            'tl_factorvalues_fk' => bless( {
!                                            'fkey_name' => 'tl_factorvalues_fk',
!                                            'pkey_name' => 'ef_fk',
                                             'fkey_type' => 'ONE_TO_MANY_LINK',
!                                            'table_name' => 'TL_FactorValues'
                                           }, 'Bio::Genex::Fkey' ),
-           'tl_factorvalues_obj' => bless( {
-                                             'fkey_name' => 'tl_factorvalues_obj',
-                                             'pkey_name' => 'ef_fk',
-                                             'can_self_reference' => undef,
-                                             'fkey_type' => 'ONE_TO_MANY_LINK_OO',
-                                             'table_name' => 'TL_FactorValues'
-                                           }, 'Bio::Genex::Fkey' ),
            'am_factorvalues_fk' => bless( {
!                                            'fkey_name' => 'am_factorvalues_fk',
!                                            'pkey_name' => 'ef_fk',
                                             'fkey_type' => 'ONE_TO_MANY_LINK',
!                                            'table_name' => 'AM_FactorValues'
                                           }, 'Bio::Genex::Fkey' ),
            'am_factorvalues_obj' => bless( {
                                              'fkey_name' => 'am_factorvalues_obj',
-                                             'pkey_name' => 'ef_fk',
                                              'can_self_reference' => undef,
                                              'fkey_type' => 'ONE_TO_MANY_LINK_OO',
!                                             'table_name' => 'AM_FactorValues'
!                                           }, 'Bio::Genex::Fkey' )
          }
  ;
  
    $COLUMN2NAME  = {
-           'audit_fk' => 'Audit',
-           'major_category' => 'Major Category',
            'minor_category' => 'Minor Category',
-           'factor_units' => 'Factor Units',
            'es_fk' => 'Experiment Set',
            'ef_pk' => 'Accession Number',
!           'factor_name' => 'Factor Name'
          }
  ;
    $NAME2COLUMN  = {
            'Accession Number' => 'ef_pk',
            'Minor Category' => 'minor_category',
            'Factor Name' => 'factor_name',
!           'Major Category' => 'major_category',
!           'Experiment Set' => 'es_fk',
!           'Audit' => 'audit_fk',
!           'Factor Units' => 'factor_units'
          }
  ;
    $FKEY_OBJ2RAW = {
-           'es_obj' => 'es_fk',
            'audit_obj' => 'audit_fk',
            'tl_factorvalues_obj' => 'tl_factorvalues_fk',
!           'am_factorvalues_obj' => 'am_factorvalues_fk'
          }
  ;
--- 61,132 ----
  ;
   $FKEYS = {
            'tl_factorvalues_fk' => bless( {
!                                            'table_name' => 'TL_FactorValues',
                                             'fkey_type' => 'ONE_TO_MANY_LINK',
!                                            'fkey_name' => 'tl_factorvalues_fk',
!                                            'pkey_name' => 'ef_fk'
                                           }, 'Bio::Genex::Fkey' ),
            'am_factorvalues_fk' => bless( {
!                                            'table_name' => 'AM_FactorValues',
                                             'fkey_type' => 'ONE_TO_MANY_LINK',
!                                            'fkey_name' => 'am_factorvalues_fk',
!                                            'pkey_name' => 'ef_fk'
                                           }, 'Bio::Genex::Fkey' ),
+           'audit_obj' => bless( {
+                                   'table_name' => 'Audit',
+                                   'fkey_type' => 'ONE_TO_ONE_OO',
+                                   'fkey_name' => 'audit_obj',
+                                   'can_self_reference' => 'false',
+                                   'pkey_name' => 'audit_pk'
+                                 }, 'Bio::Genex::Fkey' ),
            'am_factorvalues_obj' => bless( {
+                                             'fkey_type' => 'ONE_TO_MANY_LINK_OO',
+                                             'table_name' => 'AM_FactorValues',
                                              'fkey_name' => 'am_factorvalues_obj',
                                              'can_self_reference' => undef,
+                                             'pkey_name' => 'ef_fk'
+                                           }, 'Bio::Genex::Fkey' ),
+           'tl_factorvalues_obj' => bless( {
                                              'fkey_type' => 'ONE_TO_MANY_LINK_OO',
!                                             'table_name' => 'TL_FactorValues',
!                                             'fkey_name' => 'tl_factorvalues_obj',
!                                             'can_self_reference' => undef,
!                                             'pkey_name' => 'ef_fk'
!                                           }, 'Bio::Genex::Fkey' ),
!           'es_obj' => bless( {
!                                'table_name' => 'ExperimentSet',
!                                'fkey_type' => 'MANY_TO_ONE_OO',
!                                'fkey_name' => 'es_obj',
!                                'can_self_reference' => 'false',
!                                'pkey_name' => 'es_pk'
!                              }, 'Bio::Genex::Fkey' )
          }
  ;
  
    $COLUMN2NAME  = {
            'minor_category' => 'Minor Category',
            'es_fk' => 'Experiment Set',
            'ef_pk' => 'Accession Number',
!           'factor_units' => 'Factor Units',
!           'factor_name' => 'Factor Name',
!           'audit_fk' => 'Audit',
!           'major_category' => 'Major Category'
          }
  ;
    $NAME2COLUMN  = {
+           'Audit' => 'audit_fk',
            'Accession Number' => 'ef_pk',
+           'Major Category' => 'major_category',
            'Minor Category' => 'minor_category',
+           'Factor Units' => 'factor_units',
            'Factor Name' => 'factor_name',
!           'Experiment Set' => 'es_fk'
          }
  ;
    $FKEY_OBJ2RAW = {
            'audit_obj' => 'audit_fk',
+           'am_factorvalues_obj' => 'am_factorvalues_fk',
            'tl_factorvalues_obj' => 'tl_factorvalues_fk',
!           'es_obj' => 'es_fk'
          }
  ;

[Genex-cvs-commit] genex-server/Genex/ContactType ContactType.pm,1.20,1.21

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/ContactType
In directory sc8-pr-cvs1:/tmp/cvs-serv12879/ContactType

Modified Files:
	ContactType.pm 
Log Message:
new files

Index: ContactType.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/ContactType/ContactType.pm,v
retrieving revision 1.20
retrieving revision 1.21
diff -C2 -d -r1.20 -r1.21
*** ContactType.pm	16 Apr 2003 23:23:46 -0000	1.20
--- ContactType.pm	23 Apr 2003 23:58:32 -0000	1.21
***************
*** 54,63 ****
   $FKEYS = {
            'con_obj' => bless( {
!                               'fkey_name' => 'con_obj',
!                               'can_self_reference' => 'false',
!                               'pkey_name' => 'con_pk',
!                               'fkey_type' => 'MANY_TO_ONE_OO',
!                               'table_name' => 'Contact'
!                             }, 'Bio::Genex::Fkey' )
          }
  ;
--- 54,63 ----
   $FKEYS = {
            'con_obj' => bless( {
!                                 'table_name' => 'Contact',
!                                 'fkey_type' => 'MANY_TO_ONE_OO',
!                                 'fkey_name' => 'con_obj',
!                                 'can_self_reference' => 'false',
!                                 'pkey_name' => 'con_pk'
!                               }, 'Bio::Genex::Fkey' )
          }
  ;
***************
*** 69,74 ****
  ;
    $NAME2COLUMN  = {
!           'Type' => 'type',
!           'Accession Number' => 'con_fk'
          }
  ;
--- 69,74 ----
  ;
    $NAME2COLUMN  = {
!           'Accession Number' => 'con_fk',
!           'Type' => 'type'
          }
  ;

[Genex-cvs-commit] genex-server/Genex/Citation Citation.pm,1.39,1.40

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/Citation
In directory sc8-pr-cvs1:/tmp/cvs-serv12879/Citation

Modified Files:
	Citation.pm 
Log Message:
new files

Index: Citation.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/Citation/Citation.pm,v
retrieving revision 1.39
retrieving revision 1.40
diff -C2 -d -r1.39 -r1.40
*** Citation.pm	16 Apr 2003 23:23:45 -0000	1.39
--- Citation.pm	23 Apr 2003 23:58:32 -0000	1.40
***************
*** 65,104 ****
   $FKEYS = {
            'audit_obj' => bless( {
!                                 'fkey_name' => 'audit_obj',
!                                 'can_self_reference' => 'false',
!                                 'pkey_name' => 'audit_pk',
!                                 'fkey_type' => 'ONE_TO_ONE_OO',
!                                 'table_name' => 'Audit'
!                               }, 'Bio::Genex::Fkey' )
          }
  ;
  
    $COLUMN2NAME  = {
-           'authors' => 'Authors',
-           'audit_fk' => 'Audit',
            'volume' => 'Volume',
            'issue' => 'Issue',
-           'cit_pk' => 'Accession Number',
-           'editor' => 'Editor',
-           'url' => 'URL',
            'title' => 'Title',
            'publication' => 'Publication',
!           'publisher' => 'Publisher',
            'pages' => 'Pages',
!           'year' => 'Year'
          }
  ;
    $NAME2COLUMN  = {
-           'URL' => 'url',
-           'Publisher' => 'publisher',
            'Volume' => 'volume',
-           'Publication' => 'publication',
-           'Pages' => 'pages',
            'Issue' => 'issue',
-           'Authors' => 'authors',
            'Title' => 'title',
-           'Year' => 'year',
            'Accession Number' => 'cit_pk',
            'Editor' => 'editor',
            'Audit' => 'audit_fk'
          }
--- 65,104 ----
   $FKEYS = {
            'audit_obj' => bless( {
!                                   'table_name' => 'Audit',
!                                   'fkey_type' => 'ONE_TO_ONE_OO',
!                                   'fkey_name' => 'audit_obj',
!                                   'can_self_reference' => 'false',
!                                   'pkey_name' => 'audit_pk'
!                                 }, 'Bio::Genex::Fkey' )
          }
  ;
  
    $COLUMN2NAME  = {
            'volume' => 'Volume',
            'issue' => 'Issue',
            'title' => 'Title',
+           'year' => 'Year',
            'publication' => 'Publication',
!           'authors' => 'Authors',
            'pages' => 'Pages',
!           'editor' => 'Editor',
!           'url' => 'URL',
!           'publisher' => 'Publisher',
!           'cit_pk' => 'Accession Number',
!           'audit_fk' => 'Audit'
          }
  ;
    $NAME2COLUMN  = {
            'Volume' => 'volume',
            'Issue' => 'issue',
            'Title' => 'title',
            'Accession Number' => 'cit_pk',
+           'Year' => 'year',
+           'Publication' => 'publication',
+           'Authors' => 'authors',
+           'Pages' => 'pages',
            'Editor' => 'editor',
+           'URL' => 'url',
+           'Publisher' => 'publisher',
            'Audit' => 'audit_fk'
          }

[Genex-cvs-commit] genex-server/Genex/Chromosome Chromosome.pm,1.43,1.44

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/Chromosome
In directory sc8-pr-cvs1:/tmp/cvs-serv12879/Chromosome

Modified Files:
	Chromosome.pm 
Log Message:
new files

Index: Chromosome.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/Chromosome/Chromosome.pm,v
retrieving revision 1.43
retrieving revision 1.44
diff -C2 -d -r1.43 -r1.44
*** Chromosome.pm	16 Apr 2003 23:23:44 -0000	1.43
--- Chromosome.pm	23 Apr 2003 23:58:31 -0000	1.44
***************
*** 57,96 ****
  ;
   $FKEYS = {
!           'audit_obj' => bless( {
!                                 'fkey_name' => 'audit_obj',
                                  'can_self_reference' => 'false',
!                                 'pkey_name' => 'audit_pk',
!                                 'fkey_type' => 'ONE_TO_ONE_OO',
!                                 'table_name' => 'Audit'
                                }, 'Bio::Genex::Fkey' ),
!           'spc_obj' => bless( {
!                               'fkey_name' => 'spc_obj',
!                               'can_self_reference' => 'false',
!                               'pkey_name' => 'spc_pk',
!                               'fkey_type' => 'MANY_TO_ONE_OO',
!                               'table_name' => 'Species'
!                             }, 'Bio::Genex::Fkey' )
          }
  ;
  
    $COLUMN2NAME  = {
-           'audit_fk' => 'Audit',
            'length' => 'Length',
            'spc_fk' => 'Species',
!           'name' => 'Name',
!           'chr_pk' => 'Accession Number'
          }
  ;
    $NAME2COLUMN  = {
-           'Length' => 'length',
-           'Accession Number' => 'chr_pk',
            'Species' => 'spc_fk',
            'Audit' => 'audit_fk',
            'Name' => 'name'
          }
  ;
    $FKEY_OBJ2RAW = {
!           'audit_obj' => 'audit_fk',
!           'spc_obj' => 'spc_fk'
          }
  ;
--- 57,96 ----
  ;
   $FKEYS = {
!           'spc_obj' => bless( {
!                                 'table_name' => 'Species',
!                                 'fkey_type' => 'MANY_TO_ONE_OO',
!                                 'fkey_name' => 'spc_obj',
                                  'can_self_reference' => 'false',
!                                 'pkey_name' => 'spc_pk'
                                }, 'Bio::Genex::Fkey' ),
!           'audit_obj' => bless( {
!                                   'table_name' => 'Audit',
!                                   'fkey_type' => 'ONE_TO_ONE_OO',
!                                   'fkey_name' => 'audit_obj',
!                                   'can_self_reference' => 'false',
!                                   'pkey_name' => 'audit_pk'
!                                 }, 'Bio::Genex::Fkey' )
          }
  ;
  
    $COLUMN2NAME  = {
            'length' => 'Length',
            'spc_fk' => 'Species',
!           'chr_pk' => 'Accession Number',
!           'audit_fk' => 'Audit',
!           'name' => 'Name'
          }
  ;
    $NAME2COLUMN  = {
            'Species' => 'spc_fk',
+           'Length' => 'length',
            'Audit' => 'audit_fk',
+           'Accession Number' => 'chr_pk',
            'Name' => 'name'
          }
  ;
    $FKEY_OBJ2RAW = {
!           'spc_obj' => 'spc_fk',
!           'audit_obj' => 'audit_fk'
          }
  ;

[Genex-cvs-commit] genex-server/Genex/Channel Channel.pm,1.11,1.12

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/Channel
In directory sc8-pr-cvs1:/tmp/cvs-serv12879/Channel

Modified Files:
	Channel.pm 
Log Message:
new files

Index: Channel.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/Channel/Channel.pm,v
retrieving revision 1.11
retrieving revision 1.12
diff -C2 -d -r1.11 -r1.12

[Genex-cvs-commit] genex-server/Genex/BlastHits BlastHits.pm,1.33,1.34

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/BlastHits
In directory sc8-pr-cvs1:/tmp/cvs-serv12879/BlastHits

Modified Files:
	BlastHits.pm 
Log Message:
new files

Index: BlastHits.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/BlastHits/BlastHits.pm,v
retrieving revision 1.33
retrieving revision 1.34
diff -C2 -d -r1.33 -r1.34
*** BlastHits.pm	16 Apr 2003 23:23:43 -0000	1.33
--- BlastHits.pm	23 Apr 2003 23:58:31 -0000	1.34
***************
*** 56,65 ****
   $FKEYS = {
            'rep_obj' => bless( {
!                               'fkey_name' => 'rep_obj',
!                               'can_self_reference' => 'false',
!                               'pkey_name' => 'rep_pk',
!                               'fkey_type' => 'MANY_TO_ONE_OO',
!                               'table_name' => 'Reporter'
!                             }, 'Bio::Genex::Fkey' )
          }
  ;
--- 56,65 ----
   $FKEYS = {
            'rep_obj' => bless( {
!                                 'table_name' => 'Reporter',
!                                 'fkey_type' => 'MANY_TO_ONE_OO',
!                                 'fkey_name' => 'rep_obj',
!                                 'can_self_reference' => 'false',
!                                 'pkey_name' => 'rep_pk'
!                               }, 'Bio::Genex::Fkey' )
          }
  ;
***************
*** 68,80 ****
            'bh_pk' => 'Accession Number',
            'expect_value' => 'Expectation Value',
!           'match_accession' => 'Match Accession',
!           'rep_fk' => 'Sequence Feature'
          }
  ;
    $NAME2COLUMN  = {
!           'Accession Number' => 'bh_pk',
            'Expectation Value' => 'expect_value',
!           'Match Accession' => 'match_accession',
!           'Sequence Feature' => 'rep_fk'
          }
  ;
--- 68,80 ----
            'bh_pk' => 'Accession Number',
            'expect_value' => 'Expectation Value',
!           'rep_fk' => 'Sequence Feature',
!           'match_accession' => 'Match Accession'
          }
  ;
    $NAME2COLUMN  = {
!           'Sequence Feature' => 'rep_fk',
            'Expectation Value' => 'expect_value',
!           'Accession Number' => 'bh_pk',
!           'Match Accession' => 'match_accession'
          }
  ;

[Genex-cvs-commit] genex-server/Genex/Audit Audit.pm,1.9,1.10

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/Audit
In directory sc8-pr-cvs1:/tmp/cvs-serv12879/Audit

Modified Files:
	Audit.pm 
Log Message:
new files

Index: Audit.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/Audit/Audit.pm,v
retrieving revision 1.9
retrieving revision 1.10
diff -C2 -d -r1.9 -r1.10
*** Audit.pm	16 Apr 2003 23:23:42 -0000	1.9
--- Audit.pm	23 Apr 2003 23:58:31 -0000	1.10
***************
*** 51,75 ****
   $FKEYS = {
            'audit_obj' => bless( {
!                                 'fkey_name' => 'audit_obj',
!                                 'can_self_reference' => 'false',
!                                 'pkey_name' => 'audit_pk',
!                                 'fkey_type' => 'ONE_TO_ONE_OO',
!                                 'table_name' => 'Audit'
!                               }, 'Bio::Genex::Fkey' )
          }
  ;
  
    $COLUMN2NAME  = {
-           'audit_fk' => 'Audit',
-           'modification_date' => 'Modification Date',
            'audit_pk' => 'Accession Number',
!           'modified_by' => 'Modified By'
          }
  ;
    $NAME2COLUMN  = {
!           'Modified By' => 'modified_by',
!           'Accession Number' => 'audit_pk',
            'Audit' => 'audit_fk',
!           'Modification Date' => 'modification_date'
          }
  ;
--- 51,75 ----
   $FKEYS = {
            'audit_obj' => bless( {
!                                   'table_name' => 'Audit',
!                                   'fkey_type' => 'ONE_TO_ONE_OO',
!                                   'fkey_name' => 'audit_obj',
!                                   'can_self_reference' => 'false',
!                                   'pkey_name' => 'audit_pk'
!                                 }, 'Bio::Genex::Fkey' )
          }
  ;
  
    $COLUMN2NAME  = {
            'audit_pk' => 'Accession Number',
!           'audit_fk' => 'Audit',
!           'modified_by' => 'Modified By',
!           'modification_date' => 'Modification Date'
          }
  ;
    $NAME2COLUMN  = {
!           'Modification Date' => 'modification_date',
            'Audit' => 'audit_fk',
!           'Accession Number' => 'audit_pk',
!           'Modified By' => 'modified_by'
          }
  ;

[Genex-cvs-commit] genex-server/Genex/AM_FactorValues AM_FactorValues.pm,1.32,1.33

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/AM_FactorValues
In directory sc8-pr-cvs1:/tmp/cvs-serv12879/AM_FactorValues

Modified Files:
	AM_FactorValues.pm 
Log Message:
new files

Index: AM_FactorValues.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/AM_FactorValues/AM_FactorValues.pm,v
retrieving revision 1.32
retrieving revision 1.33
diff -C2 -d -r1.32 -r1.33
*** AM_FactorValues.pm	16 Apr 2003 23:23:41 -0000	1.32
--- AM_FactorValues.pm	23 Apr 2003 23:58:30 -0000	1.33
***************
*** 18,23 ****
  
  use Class::ObjectTemplate::DB 0.27;
- use Bio::Genex::ExperimentFactors;
  use Bio::Genex::PhysicalBioAssay;
  
  
--- 18,23 ----
  
  use Class::ObjectTemplate::DB 0.27;
  use Bio::Genex::PhysicalBioAssay;
+ use Bio::Genex::ExperimentFactors;
  
  
***************
*** 56,78 ****
  ;
   $FKEYS = {
-           'pba_obj' => bless( {
-                               'fkey_name' => 'pba_obj',
-                               'pkey_name' => 'pba_pk',
-                               'can_self_reference' => 'false',
-                               'fkey_type' => 'LINKING_TABLE_OO',
-                               'table_name' => 'PhysicalBioAssay'
-                             }, 'Bio::Genex::Fkey' ),
            'ef_obj' => bless( {
!                              'fkey_name' => 'ef_obj',
!                              'pkey_name' => 'ef_pk',
!                              'can_self_reference' => 'false',
!                              'fkey_type' => 'LINKING_TABLE_OO',
!                              'table_name' => 'ExperimentFactors'
!                            }, 'Bio::Genex::Fkey' )
          }
  ;
    $TABLE2PKEY = {
!           'ExperimentFactors' => 'pba_fk',
!           'PhysicalBioAssay' => 'ef_fk'
          }
  ;
--- 56,78 ----
  ;
   $FKEYS = {
            'ef_obj' => bless( {
!                                'fkey_type' => 'LINKING_TABLE_OO',
!                                'table_name' => 'ExperimentFactors',
!                                'fkey_name' => 'ef_obj',
!                                'can_self_reference' => 'false',
!                                'pkey_name' => 'ef_pk'
!                              }, 'Bio::Genex::Fkey' ),
!           'pba_obj' => bless( {
!                                 'fkey_type' => 'LINKING_TABLE_OO',
!                                 'table_name' => 'PhysicalBioAssay',
!                                 'fkey_name' => 'pba_obj',
!                                 'can_self_reference' => 'false',
!                                 'pkey_name' => 'pba_pk'
!                               }, 'Bio::Genex::Fkey' )
          }
  ;
    $TABLE2PKEY = {
!           'PhysicalBioAssay' => 'ef_fk',
!           'ExperimentFactors' => 'pba_fk'
          }
  ;
***************
*** 85,96 ****
  ;
    $NAME2COLUMN  = {
-           'Experiment Factor' => 'ef_fk',
            'Value' => 'value',
!           'Array Measurement' => 'pba_fk'
          }
  ;
    $FKEY_OBJ2RAW = {
!           'pba_obj' => 'pba_fk',
!           'ef_obj' => 'ef_fk'
          }
  ;
--- 85,96 ----
  ;
    $NAME2COLUMN  = {
            'Value' => 'value',
!           'Array Measurement' => 'pba_fk',
!           'Experiment Factor' => 'ef_fk'
          }
  ;
    $FKEY_OBJ2RAW = {
!           'ef_obj' => 'ef_fk',
!           'pba_obj' => 'pba_fk'
          }
  ;

[Genex-cvs-commit] genex-server/DTD table.dtd,1.6,1.7

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/DTD
In directory sc8-pr-cvs1:/tmp/cvs-serv12103

Modified Files:
	table.dtd 
Log Message:
new attrs

Index: table.dtd
===================================================================
RCS file: /cvsroot/genex/genex-server/DTD/table.dtd,v
retrieving revision 1.6
retrieving revision 1.7
diff -C2 -d -r1.6 -r1.7
*** table.dtd	16 Apr 2003 23:17:30 -0000	1.6
--- table.dtd	23 Apr 2003 23:56:32 -0000	1.7
***************
*** 26,36 ****
                           primary_key)*                               >
  <!ATTLIST  table
-              type       CDATA                              #REQUIRED
               name       CDATA                              #REQUIRED
               comment    CDATA                              #IMPLIED
               where      CDATA                              #IMPLIED
               inherits_from
                          CDATA                              "none"
               can_self_reference
                          (true|false)                       "false"   
               is_abstract
--- 26,40 ----
                           primary_key)*                               >
  <!ATTLIST  table
               name       CDATA                              #REQUIRED
+              abbrev_name
+                         CDATA                              #IMPLIED
               comment    CDATA                              #IMPLIED
+              type       CDATA                              #REQUIRED
               where      CDATA                              #IMPLIED
               inherits_from
                          CDATA                              "none"
               can_self_reference
+                         (true|false)                       "false"   
+              is_securable
                          (true|false)                       "false"   
               is_abstract

[Genex-cvs-commit] genex-server/Genex/scripts create_genex_class.pl.in,1.21,1.22

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/scripts
In directory sc8-pr-cvs1:/tmp/cvs-serv10651

Modified Files:
	create_genex_class.pl.in 
Log Message:
added quote_identifier() call in insert_db() unique column check

Index: create_genex_class.pl.in
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/scripts/create_genex_class.pl.in,v
retrieving revision 1.21
retrieving revision 1.22
diff -C2 -d -r1.21 -r1.22
*** create_genex_class.pl.in	12 Jan 2003 22:07:20 -0000	1.21
--- create_genex_class.pl.in	23 Apr 2003 23:54:38 -0000	1.22
***************
*** 1655,1658 ****
--- 1655,1660 ----
      # it fails for any one group we ext
      foreach my \$uniques (\@{\$self->unique_columns}) {
+       # we have to quote the column names in case they have reserved words
+       \$unique = \$dbh->quote_identifier(\$unique);
        foreach my \$unique (\@{\$uniques}) {
          my \$value = \$self->get_attribute(\$unique);

[Genex-cvs-commit] genex-server/Genex/UserSec UserSec.pm,1.39,1.40

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/UserSec
In directory sc8-pr-cvs1:/tmp/cvs-serv5075/UserSec

Modified Files:
	UserSec.pm 
Log Message:
new inheritance patterns


Index: UserSec.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/UserSec/UserSec.pm,v
retrieving revision 1.39
retrieving revision 1.40
diff -C2 -d -r1.39 -r1.40

[Genex-cvs-commit] genex-server/Genex ChangeLog,1.133,1.134

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex
In directory sc8-pr-cvs1:/tmp/cvs-serv11538

Modified Files:
	ChangeLog 
Log Message:
usual


Index: ChangeLog
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/ChangeLog,v
retrieving revision 1.133
retrieving revision 1.134
diff -C2 -d -r1.133 -r1.134
*** ChangeLog	20 Apr 2003 02:10:57 -0000	1.133
--- ChangeLog	23 Apr 2003 22:26:19 -0000	1.134
***************
*** 1,2 ****
--- 1,15 ----
+ 2003-04-23  Jason E. Stewart  <ja...@op...>
+ 
+ 	* Genex.pm.in (Repository): 
+ 	new version (2.7.20030422)
+ 
+ 2003-04-21  Jason E. Stewart  <ja...@op...>
+ 
+ 	* scripts/parameter-insert.pl.in (Repository): 
+ 	now returns the newly inserted pkey
+ 
+ 	* Genex.pm.in (Repository): 
+ 	new version (2.7.20030421)
+ 
  2003-04-19  Jason E. Stewart  <ja...@op...>
  

[Genex-cvs-commit] genex-server/Genex/Array Array.pm,1.9,1.10

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/Array
In directory sc8-pr-cvs1:/tmp/cvs-serv5075/Array

Modified Files:
	Array.pm 
Log Message:
new inheritance patterns


Index: Array.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/Array/Array.pm,v
retrieving revision 1.9
retrieving revision 1.10
diff -C2 -d -r1.9 -r1.10

[Genex-cvs-commit] genex-server/Genex/Species Species.pm,1.42,1.43

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/Species
In directory sc8-pr-cvs1:/tmp/cvs-serv5075/Species

Modified Files:
	Species.pm 
Log Message:
new inheritance patterns


Index: Species.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/Species/Species.pm,v
retrieving revision 1.42
retrieving revision 1.43
diff -C2 -d -r1.42 -r1.43

[Genex-cvs-commit] genex-server/Genex/ArrayDesign ArrayDesign.pm,1.9,1.10

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/ArrayDesign
In directory sc8-pr-cvs1:/tmp/cvs-serv5075/ArrayDesign

Modified Files:
	ArrayDesign.pm 
Log Message:
new inheritance patterns


Index: ArrayDesign.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/ArrayDesign/ArrayDesign.pm,v
retrieving revision 1.9
retrieving revision 1.10
diff -C2 -d -r1.9 -r1.10

[Genex-cvs-commit] genex-server/Genex/Reporter Reporter.pm,1.10,1.11

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/Reporter
In directory sc8-pr-cvs1:/tmp/cvs-serv5075/Reporter

Modified Files:
	Reporter.pm 
Log Message:
new inheritance patterns


Index: Reporter.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/Reporter/Reporter.pm,v
retrieving revision 1.10
retrieving revision 1.11
diff -C2 -d -r1.10 -r1.11

[Genex-cvs-commit] genex-server/Genex/Sample Sample.pm,1.36,1.37

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/Sample
In directory sc8-pr-cvs1:/tmp/cvs-serv5075/Sample

Modified Files:
	Sample.pm 
Log Message:
new inheritance patterns


Index: Sample.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/Sample/Sample.pm,v
retrieving revision 1.36
retrieving revision 1.37
diff -C2 -d -r1.36 -r1.37

[Genex-cvs-commit] genex-server/Genex/ProtocolStep ProtocolStep.pm,1.2,1.3

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/ProtocolStep
In directory sc8-pr-cvs1:/tmp/cvs-serv5075/ProtocolStep

Modified Files:
	ProtocolStep.pm 
Log Message:
new inheritance patterns


Index: ProtocolStep.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/ProtocolStep/ProtocolStep.pm,v
retrieving revision 1.2
retrieving revision 1.3
diff -C2 -d -r1.2 -r1.3
*** ProtocolStep.pm	17 Apr 2003 18:00:36 -0000	1.2
--- ProtocolStep.pm	23 Apr 2003 22:21:06 -0000	1.3
***************
*** 48,52 ****
          ]
  ;
!   $UNIQUE_COLUMNS = []
  ;
   $FKEYS = {
--- 48,57 ----
          ]
  ;
!   $UNIQUE_COLUMNS = [
!           [
!             'order',
!             'protocol_fk'
!           ]
!         ]
  ;
   $FKEYS = {

[Genex-cvs-commit] genex-server/Genex/PhysicalBioAssay PhysicalBioAssay.pm,1.9,1.10

[<jas...@us...>]

Update of /cvsroot/genex/genex-server/Genex/PhysicalBioAssay
In directory sc8-pr-cvs1:/tmp/cvs-serv5075/PhysicalBioAssay

Modified Files:
	PhysicalBioAssay.pm 
Log Message:
new inheritance patterns


Index: PhysicalBioAssay.pm
===================================================================
RCS file: /cvsroot/genex/genex-server/Genex/PhysicalBioAssay/PhysicalBioAssay.pm,v
retrieving revision 1.9
retrieving revision 1.10
diff -C2 -d -r1.9 -r1.10