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| 2003 |
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From: <tw...@us...> - 2002-10-24 21:00:10
|
Update of /cvsroot/genex/genex-server/Genex/Citation
In directory usw-pr-cvs1:/tmp/cvs-serv28884/Genex/Citation
Removed Files:
Tag: Rel-1_0_1-branch
.cvsignore Citation.pm Makefile.PL column2name
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- .cvsignore DELETED ---
--- Citation.pm DELETED ---
--- Makefile.PL DELETED ---
--- column2name DELETED ---
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From: <tw...@us...> - 2002-10-24 21:00:01
|
Update of /cvsroot/genex/genex-server/Genex/ArrayMeasurement
In directory usw-pr-cvs1:/tmp/cvs-serv28884/Genex/ArrayMeasurement
Removed Files:
Tag: Rel-1_0_1-branch
.cvsignore ArrayMeasurement.pm Makefile.PL column2name
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- .cvsignore DELETED ---
--- ArrayMeasurement.pm DELETED ---
--- Makefile.PL DELETED ---
--- column2name DELETED ---
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Update of /cvsroot/genex/genex-server/DB/controlled_vocab
In directory usw-pr-cvs1:/tmp/cvs-serv28884/DB/controlled_vocab
Removed Files:
Tag: Rel-1_0_1-branch
ALS_SpotType.xml ALS_SpotTypeWannabe.xml.new AL_Coating.xml
AL_DefaultSpotConcUnits.xml AL_IdentifierCode.xml
AL_Medium.xml AL_TechnologyType.xml AM_EquationType.xml
AM_SpotMeasurementUnits.xml AM_Type.xml ContactType.xml
EF_MajorCategory.xml EF_MinorCategory.xml
ES_QuantitySeriesType.xml ES_TreatmentType.xml
HS_ThresholdType.xml PRT_Type.xml SCN_ModelDescription.xml
SMP_AgeUnits.xml SMP_DevelopmentStageName.xml
SMP_DevelopmentStageUnits.xml SMP_GeneticStatus.xml
SMP_OrganType.xml SMP_OrganismIntactness.xml
SMP_PrimaryCellType.xml SMP_SexMatingType.xml
SMP_TissueType.xml SPC_CellStructure.xml
SPC_GeneralClassification.xml SPT_ModelDescription.xml
SW_Name.xml SW_Type.xml USF_Type.xml
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- ALS_SpotType.xml DELETED ---
--- ALS_SpotTypeWannabe.xml.new DELETED ---
--- AL_Coating.xml DELETED ---
--- AL_DefaultSpotConcUnits.xml DELETED ---
--- AL_IdentifierCode.xml DELETED ---
--- AL_Medium.xml DELETED ---
--- AL_TechnologyType.xml DELETED ---
--- AM_EquationType.xml DELETED ---
--- AM_SpotMeasurementUnits.xml DELETED ---
--- AM_Type.xml DELETED ---
--- ContactType.xml DELETED ---
--- EF_MajorCategory.xml DELETED ---
--- EF_MinorCategory.xml DELETED ---
--- ES_QuantitySeriesType.xml DELETED ---
--- ES_TreatmentType.xml DELETED ---
--- HS_ThresholdType.xml DELETED ---
--- PRT_Type.xml DELETED ---
--- SCN_ModelDescription.xml DELETED ---
--- SMP_AgeUnits.xml DELETED ---
--- SMP_DevelopmentStageName.xml DELETED ---
--- SMP_DevelopmentStageUnits.xml DELETED ---
--- SMP_GeneticStatus.xml DELETED ---
--- SMP_OrganType.xml DELETED ---
--- SMP_OrganismIntactness.xml DELETED ---
--- SMP_PrimaryCellType.xml DELETED ---
--- SMP_SexMatingType.xml DELETED ---
--- SMP_TissueType.xml DELETED ---
--- SPC_CellStructure.xml DELETED ---
--- SPC_GeneralClassification.xml DELETED ---
--- SPT_ModelDescription.xml DELETED ---
--- SW_Name.xml DELETED ---
--- SW_Type.xml DELETED ---
--- USF_Type.xml DELETED ---
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From: <tw...@us...> - 2002-10-24 20:21:57
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Update of /cvsroot/genex/genex-server/Genex/AM_Spots
In directory usw-pr-cvs1:/tmp/cvs-serv28884/Genex/AM_Spots
Removed Files:
Tag: Rel-1_0_1-branch
.cvsignore AM_Spots.pm Makefile.PL column2name
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- .cvsignore DELETED ---
--- AM_Spots.pm DELETED ---
--- Makefile.PL DELETED ---
--- column2name DELETED ---
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Update of /cvsroot/genex/genex-server/DB/tdscripts
In directory usw-pr-cvs1:/tmp/cvs-serv28884/DB/tdscripts
Removed Files:
Tag: Rel-1_0_1-branch
AL_Spots.tablepg AM_FactorValues.tablepg AM_Spots.tablepg
AM_SuspectSpots.tablepg ArrayLayout.tablepg
ArrayMeasurement.tablepg BlastHits.tablepg ChangeLog
Chromosome.tablepg Citation.tablepg Contact.tablepg
ExperimentFactors.tablepg ExperimentSet.tablepg
ExternalDatabase.tablepg GenexAdmin.tablepg GroupLink.tablepg
GroupSec.tablepg HotSpots.tablepg Protocol.tablepg
SF_ExternalDBLink.tablepg Sample.tablepg
SampleProtocols.tablepg Scanner.tablepg Security.tablepg
SequenceFeature.tablepg Software.tablepg Species.tablepg
Spotter.tablepg TL_FactorValues.tablepg TreatmentLevel.tablepg
Treatment_AMs.tablepg UserSec.tablepg create_genex_db.pl
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- AL_Spots.tablepg DELETED ---
--- AM_FactorValues.tablepg DELETED ---
--- AM_Spots.tablepg DELETED ---
--- AM_SuspectSpots.tablepg DELETED ---
--- ArrayLayout.tablepg DELETED ---
--- ArrayMeasurement.tablepg DELETED ---
--- BlastHits.tablepg DELETED ---
--- ChangeLog DELETED ---
--- Chromosome.tablepg DELETED ---
--- Citation.tablepg DELETED ---
--- Contact.tablepg DELETED ---
--- ExperimentFactors.tablepg DELETED ---
--- ExperimentSet.tablepg DELETED ---
--- ExternalDatabase.tablepg DELETED ---
--- GenexAdmin.tablepg DELETED ---
--- GroupLink.tablepg DELETED ---
--- GroupSec.tablepg DELETED ---
--- HotSpots.tablepg DELETED ---
--- Protocol.tablepg DELETED ---
--- SF_ExternalDBLink.tablepg DELETED ---
--- Sample.tablepg DELETED ---
--- SampleProtocols.tablepg DELETED ---
--- Scanner.tablepg DELETED ---
--- Security.tablepg DELETED ---
--- SequenceFeature.tablepg DELETED ---
--- Software.tablepg DELETED ---
--- Species.tablepg DELETED ---
--- Spotter.tablepg DELETED ---
--- TL_FactorValues.tablepg DELETED ---
--- TreatmentLevel.tablepg DELETED ---
--- Treatment_AMs.tablepg DELETED ---
--- UserSec.tablepg DELETED ---
--- create_genex_db.pl DELETED ---
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From: <tw...@us...> - 2002-10-24 15:37:00
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Update of /cvsroot/genex/genex-server/rcluster-1.0
In directory usw-pr-cvs1:/tmp/cvs-serv28884/rcluster-1.0
Removed Files:
Tag: Rel-1_0_1-branch
.cvsignore INSTALL Makefile README configure
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- .cvsignore DELETED ---
--- INSTALL DELETED ---
--- Makefile DELETED ---
--- README DELETED ---
--- configure DELETED ---
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From: <tw...@us...> - 2002-10-24 15:37:00
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Update of /cvsroot/genex/genex-server/rcluster-1.0/cgi-bin
In directory usw-pr-cvs1:/tmp/cvs-serv28884/rcluster-1.0/cgi-bin
Removed Files:
Tag: Rel-1_0_1-branch
.cvsignore .htaccess Makefile download.cgi.in error.cgi.in
halt.cgi.in index.cgi.in results.cgi.in show_node.cgi.in
start.cgi.in status.cgi.in
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- .cvsignore DELETED ---
--- .htaccess DELETED ---
--- Makefile DELETED ---
--- download.cgi.in DELETED ---
--- error.cgi.in DELETED ---
--- halt.cgi.in DELETED ---
--- index.cgi.in DELETED ---
--- results.cgi.in DELETED ---
--- show_node.cgi.in DELETED ---
--- start.cgi.in DELETED ---
--- status.cgi.in DELETED ---
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From: <tw...@us...> - 2002-10-24 15:36:59
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Update of /cvsroot/genex/genex-server/rcluster-1.0/htdocs
In directory usw-pr-cvs1:/tmp/cvs-serv28884/rcluster-1.0/htdocs
Removed Files:
Tag: Rel-1_0_1-branch
.cvsignore Makefile help.html.in install_html.pl.in
yeast160.dat
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- .cvsignore DELETED ---
--- Makefile DELETED ---
--- help.html.in DELETED ---
--- install_html.pl.in DELETED ---
--- yeast160.dat DELETED ---
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From: <tw...@us...> - 2002-10-24 15:36:58
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Update of /cvsroot/genex/genex-server/rcluster-1.0/lib/perl/Services
In directory usw-pr-cvs1:/tmp/cvs-serv28884/rcluster-1.0/lib/perl/Services
Removed Files:
Tag: Rel-1_0_1-branch
Hierarchical.pm KMeans.pm Makefile Permutation.pm
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- Hierarchical.pm DELETED ---
--- KMeans.pm DELETED ---
--- Makefile DELETED ---
--- Permutation.pm DELETED ---
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Update of /cvsroot/genex/genex-server/rcluster-1.0/lib/perl
In directory usw-pr-cvs1:/tmp/cvs-serv28884/rcluster-1.0/lib/perl
Removed Files:
Tag: Rel-1_0_1-branch
.cvsignore HCluster.pm JobControl.pm Layout.pm Makefile
Utils.pm
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- .cvsignore DELETED ---
--- HCluster.pm DELETED ---
--- JobControl.pm DELETED ---
--- Layout.pm DELETED ---
--- Makefile DELETED ---
--- Utils.pm DELETED ---
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From: <tw...@us...> - 2002-10-24 15:36:57
|
Update of /cvsroot/genex/genex-server/rcluster-1.0/lib/r
In directory usw-pr-cvs1:/tmp/cvs-serv28884/rcluster-1.0/lib/r
Removed Files:
Tag: Rel-1_0_1-branch
Makefile hcluster.r permcluster.r
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- Makefile DELETED ---
--- hcluster.r DELETED ---
--- permcluster.r DELETED ---
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Update of /cvsroot/genex/genex-server/rcluster-1.0/share/sample_input
In directory usw-pr-cvs1:/tmp/cvs-serv28884/rcluster-1.0/share/sample_input
Removed Files:
Tag: Rel-1_0_1-branch
DESCRIPTIONS Makefile yeast160.dat yeast63.dat
yeast64_rclust_demo.dat
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- DESCRIPTIONS DELETED ---
--- Makefile DELETED ---
--- yeast160.dat DELETED ---
--- yeast63.dat DELETED ---
--- yeast64_rclust_demo.dat DELETED ---
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From: <tw...@us...> - 2002-10-24 15:36:55
|
Update of /cvsroot/genex/genex-server/rcluster-1.0/lib
In directory usw-pr-cvs1:/tmp/cvs-serv28884/rcluster-1.0/lib
Removed Files:
Tag: Rel-1_0_1-branch
Makefile
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- Makefile DELETED ---
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From: <tw...@us...> - 2002-10-24 15:36:55
|
Update of /cvsroot/genex/genex-server/rcluster-1.0/share
In directory usw-pr-cvs1:/tmp/cvs-serv28884/rcluster-1.0/share
Removed Files:
Tag: Rel-1_0_1-branch
Makefile
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- Makefile DELETED ---
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From: <tw...@us...> - 2002-10-24 15:36:54
|
Update of /cvsroot/genex/genex-server/rcluster-1.0/src/jpywork
In directory usw-pr-cvs1:/tmp/cvs-serv28884/rcluster-1.0/src/jpywork
Removed Files:
Tag: Rel-1_0_1-branch
dendro$KeyListener.class dendro$Listener.class
dendro$MotionListener.class dendro$_PyInner.class dendro.class
dendro.java string$_PyInner.class string.class string.java
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- dendro$KeyListener.class DELETED ---
--- dendro$Listener.class DELETED ---
--- dendro$MotionListener.class DELETED ---
--- dendro$_PyInner.class DELETED ---
--- dendro.class DELETED ---
--- dendro.java DELETED ---
--- string$_PyInner.class DELETED ---
--- string.class DELETED ---
--- string.java DELETED ---
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From: <tw...@us...> - 2002-10-24 15:36:53
|
Update of /cvsroot/genex/genex-server/rcluster-1.0/src
In directory usw-pr-cvs1:/tmp/cvs-serv28884/rcluster-1.0/src
Removed Files:
Tag: Rel-1_0_1-branch
Makefile dendro.jar dendro.py
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- Makefile DELETED ---
--- dendro.jar DELETED ---
--- dendro.py DELETED ---
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Update of /cvsroot/genex/genex-server/mergem
In directory usw-pr-cvs1:/tmp/cvs-serv28884/mergem
Removed Files:
Tag: Rel-1_0_1-branch
.cvsignore file1 file2 mergem.form.html.in
mergem.handler.pl.in mergem.html.in mergem.in
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- .cvsignore DELETED ---
--- file1 DELETED ---
--- file2 DELETED ---
--- mergem.form.html.in DELETED ---
--- mergem.handler.pl.in DELETED ---
--- mergem.html.in DELETED ---
--- mergem.in DELETED ---
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From: <tw...@us...> - 2002-10-24 15:36:52
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Update of /cvsroot/genex/genex-server/include
In directory usw-pr-cvs1:/tmp/cvs-serv28884/include
Removed Files:
Tag: Rel-1_0_1-branch
.cvsignore analysis_tools_header.inc background_header.inc
curation_tool_header.inc footer.inc genex_info_header.inc
header.inc navigation.inc.in
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- .cvsignore DELETED ---
--- analysis_tools_header.inc DELETED ---
--- background_header.inc DELETED ---
--- curation_tool_header.inc DELETED ---
--- footer.inc DELETED ---
--- genex_info_header.inc DELETED ---
--- header.inc DELETED ---
--- navigation.inc.in DELETED ---
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From: <tw...@us...> - 2002-10-24 15:36:50
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Update of /cvsroot/genex/genex-server/login
In directory usw-pr-cvs1:/tmp/cvs-serv28884/login
Removed Files:
Tag: Rel-1_0_1-branch
.cvsignore README accountAccess.pl.in admin_cli.pl.in
createLogin.pl.in editaccount2.html formpart1.html
formpart2.html sessionlib.pl.in
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- .cvsignore DELETED ---
--- README DELETED ---
--- accountAccess.pl.in DELETED ---
--- admin_cli.pl.in DELETED ---
--- createLogin.pl.in DELETED ---
--- editaccount2.html DELETED ---
--- formpart1.html DELETED ---
--- formpart2.html DELETED ---
--- sessionlib.pl.in DELETED ---
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From: <tw...@us...> - 2002-10-24 15:36:48
|
Update of /cvsroot/genex/genex-server/gxquery
In directory usw-pr-cvs1:/tmp/cvs-serv28884/gxquery
Removed Files:
Tag: Rel-1_0_1-branch
.cvsignore ChangeLog NotYet.pl.in TODO fetch_array.pl.in
fetch_es.pl.in fetch_spot.pl.in gxquery.help.html
query_intro.pl.in tab2excel.pl.in
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- .cvsignore DELETED ---
--- ChangeLog DELETED ---
--- NotYet.pl.in DELETED ---
--- TODO DELETED ---
--- fetch_array.pl.in DELETED ---
--- fetch_es.pl.in DELETED ---
--- fetch_spot.pl.in DELETED ---
--- gxquery.help.html DELETED ---
--- query_intro.pl.in DELETED ---
--- tab2excel.pl.in DELETED ---
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From: <tw...@us...> - 2002-10-24 15:36:48
|
Update of /cvsroot/genex/genex-server/download/curation_tool
In directory usw-pr-cvs1:/tmp/cvs-serv28884/download/curation_tool
Removed Files:
Tag: Rel-1_0_1-branch
index.shtml
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- index.shtml DELETED ---
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From: <tw...@us...> - 2002-10-24 15:36:47
|
Update of /cvsroot/genex/genex-server/download
In directory usw-pr-cvs1:/tmp/cvs-serv28884/download
Removed Files:
Tag: Rel-1_0_1-branch
ChangeLog index.shtml
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- ChangeLog DELETED ---
--- index.shtml DELETED ---
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Update of /cvsroot/genex/genex-server/curation-tool
In directory usw-pr-cvs1:/tmp/cvs-serv28884/curation-tool
Removed Files:
Tag: Rel-1_0_1-branch
.cvsignore LoginUtil.pm.in cb-auth-login.pl.in
cb-invalid-login.pl.in cb-login.pl.in display-cb-list.pl.in
display-error.pl.in display-expset-list.pl.in download.pl.in
expset-auth-login.pl.in expset-invalid-login.pl.in
expset-login.pl.in expset-submit.pl.in generate-cb.pl.in
generate-expset.pl.in save-expset.pl.in status.pl.in
submit-auth-login.pl.in submit-form.pl.in
submit-invalid-login.pl.in testcgi.pl.in
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- .cvsignore DELETED ---
--- LoginUtil.pm.in DELETED ---
--- cb-auth-login.pl.in DELETED ---
--- cb-invalid-login.pl.in DELETED ---
--- cb-login.pl.in DELETED ---
--- display-cb-list.pl.in DELETED ---
--- display-error.pl.in DELETED ---
--- display-expset-list.pl.in DELETED ---
--- download.pl.in DELETED ---
--- expset-auth-login.pl.in DELETED ---
--- expset-invalid-login.pl.in DELETED ---
--- expset-login.pl.in DELETED ---
--- expset-submit.pl.in DELETED ---
--- generate-cb.pl.in DELETED ---
--- generate-expset.pl.in DELETED ---
--- save-expset.pl.in DELETED ---
--- status.pl.in DELETED ---
--- submit-auth-login.pl.in DELETED ---
--- submit-form.pl.in DELETED ---
--- submit-invalid-login.pl.in DELETED ---
--- testcgi.pl.in DELETED ---
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From: <tw...@us...> - 2002-10-24 15:36:45
|
Update of /cvsroot/genex/genex-server/affyloader/samples
In directory usw-pr-cvs1:/tmp/cvs-serv28884/affyloader/samples
Removed Files:
Tag: Rel-1_0_1-branch
MG-U74AV.xls 56.xls 56b.xls ES1.txt ES1.xls ES2.xls
arraylayout.xls exampleload.pl slide_input.csv
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- MG-U74AV.xls DELETED ---
--- 56.xls DELETED ---
--- 56b.xls DELETED ---
--- ES1.txt DELETED ---
--- ES1.xls DELETED ---
--- ES2.xls DELETED ---
--- arraylayout.xls DELETED ---
--- exampleload.pl DELETED ---
--- slide_input.csv DELETED ---
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Update of /cvsroot/genex/genex-server/affyloader
In directory usw-pr-cvs1:/tmp/cvs-serv28884/affyloader
Removed Files:
Tag: Rel-1_0_1-branch
.cvsignore AffyDataReader.pm.in AffyLayoutReader.pm.in
AffyTextDataReader.pm.in ArrayCoreLayoutReader.pm.in
ArrayDataReader.pm.in ArrayLayoutReader.pm.in
BiogemDataReader.pm.in BiogemLayoutReader.pm.in
BiogemLayoutUpdate.pm.in ImageneDataReader.pm.in
LoaderUtil.pm.in QuantArrayDataReader.pm.in README
loadaffy.pl.in loadaffy_report.pl.in loadaffy_verify.pl.in
loadaffylayout.pl.in loadam_spots.pl.in loadarray.pl.in
loadbiogem.pl.in loaddchip_spots.pl.in loadexperiments.pl.in
loadlayout.pl.in loadquantarray.pl.in loadreplicate.pl.in
seclib.pl.in
Log Message:
Now that the unused files are archived, I'm deleting the files.
--- .cvsignore DELETED ---
--- AffyDataReader.pm.in DELETED ---
--- AffyLayoutReader.pm.in DELETED ---
--- AffyTextDataReader.pm.in DELETED ---
--- ArrayCoreLayoutReader.pm.in DELETED ---
--- ArrayDataReader.pm.in DELETED ---
--- ArrayLayoutReader.pm.in DELETED ---
--- BiogemDataReader.pm.in DELETED ---
--- BiogemLayoutReader.pm.in DELETED ---
--- BiogemLayoutUpdate.pm.in DELETED ---
--- ImageneDataReader.pm.in DELETED ---
--- LoaderUtil.pm.in DELETED ---
--- QuantArrayDataReader.pm.in DELETED ---
--- README DELETED ---
--- loadaffy.pl.in DELETED ---
--- loadaffy_report.pl.in DELETED ---
--- loadaffy_verify.pl.in DELETED ---
--- loadaffylayout.pl.in DELETED ---
--- loadam_spots.pl.in DELETED ---
--- loadarray.pl.in DELETED ---
--- loadbiogem.pl.in DELETED ---
--- loaddchip_spots.pl.in DELETED ---
--- loadexperiments.pl.in DELETED ---
--- loadlayout.pl.in DELETED ---
--- loadquantarray.pl.in DELETED ---
--- loadreplicate.pl.in DELETED ---
--- seclib.pl.in DELETED ---
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