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Re: [Genesis-sim-users] question about Genesis via batch systems
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From: Susan C. <su...@he...> - 2017-06-06 19:31:37
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Many thanks for all the responses. I'll give it a try and let you know if I have problems. Susan On 6/6/17 2:20 PM, Dave Beeman wrote: > Also, see the Doc genesis.txt and Simulations.txt for suggestions on running in the background. > > Dave > > On 06/06/2017 10:15 AM, Hugo Cornelis wrote: >> >> >> Hi Susan, >> >> I use the screen command for running Genesis in the background. >> >> The screen command detaches the terminal session from your window and continues running in the >> background. After detaching, you can reattach a few hours or days later via the same screen command. >> >> Typing screen in a system shell creates a new session. >> >> Typing control-a control-d in such a session detaches that session and puts it in the background. >> Running processes continue running (but they must not use any X-Window calls). >> >> Typing screen -ls in a system shell lists all the active screen sessions. >> >> Typing screen -r in a system shell reattach to a running background session. Output to the >> terminal is preserved and will be displayed. >> >> The screen command also has logging capabilities. >> >> I hope this helps. >> >> Hugo >> >> >> >> On Mon, Jun 5, 2017 at 10:19 PM, Susan Chacko <su...@he... <mailto:su...@he...>> >> wrote: >> >> Hi all, >> >> I've installed Genesis on a cluster here at the NIH (see https://hpc.nih.gov/apps/genesis.html >> <https://hpc.nih.gov/apps/genesis.html>). I can see how to run it in an interactive session, >> as I've documented on our webpage. Can Genesis be run as a detached batch job? I looked >> through the Genesis documentation, but I couldn't see how to make that work. We run the Slurm >> batch system here, and I'd like to add instructions for running batch jobs, to guide our users >> in the right direction. >> >> Any info or suggestions much appreciated, >> Susan Chacko. >> >> -- >> Susan Chacko, Ph.D. >> HPC @ NIH Staff >> >> >> ------------------------------------------------------------------------------ >> Check out the vibrant tech community on one of the world's most >> engaging tech sites, Slashdot.org! http://sdm.link/slashdot >> _______________________________________________ >> Genesis-sim-users mailing list >> Gen...@li... <mailto:Gen...@li...> >> https://lists.sourceforge.net/lists/listinfo/genesis-sim-users >> <https://lists.sourceforge.net/lists/listinfo/genesis-sim-users> >> >> >> >> >> -- >> Hugo >> >> >> >> -- >> >> Hugo Cornelis, Ph.D. >> >> Agora Classica -- CTO >> http://www.agoraclassica.com/ <http://www.genesis-sim.org/> >> >> GENESIS-3 -- lead architect >> http://www.genesis-sim.org/ >> >> >> >> ------------------------------------------------------------------------------ >> Check out the vibrant tech community on one of the world's most >> engaging tech sites, Slashdot.org!http://sdm.link/slashdot >> >> >> _______________________________________________ >> Genesis-sim-users mailing list >> Gen...@li... >> https://lists.sourceforge.net/lists/listinfo/genesis-sim-users > > > > ------------------------------------------------------------------------------ > Check out the vibrant tech community on one of the world's most > engaging tech sites, Slashdot.org! http://sdm.link/slashdot > > > > _______________________________________________ > Genesis-sim-users mailing list > Gen...@li... > https://lists.sourceforge.net/lists/listinfo/genesis-sim-users > |
