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Usage

To execute the client in order to download datasets, download geneRFinderClient.jar, check if you have Java JRE version 8 (or higher) installed and then execute:

  $ java -jar geneRFinderClient.jar <dataset_name> <resource_name>

Note: If you don't have Java installed, you can use openjdk Docker image, as described below (after executing, type exit and the downloaded files will be saved into the specified folder):

  $ docker run -it -v /folder/where/client/was/saved:/data openjdk:8
  $ cd /data
  $ java -jar geneRFinderClient.jar <dataset_name> <resource_name>

Example: to download all the files from dataset training1, run:

  $ java -jar geneRFinderClient.jar training1 all

This execution will download files sequences.fasta, genomes.csv, and groundtruth.csv from dataset training1 and save it into the current folder.

To see complete usage, run:

  $ java -jar geneRFinderClient.jar