#9909 NTR: transport regulation term

closed-accepted
None
5
2012-12-19
2012-12-19
No

I would like a term
regulation of dipeptide *transmembrane*transport by regulation of transcription from RNA polymerase II promoter
child of
GO:0035953 regulation of dipeptide transport by regulation of transcription from RNA polymerase II promoter

alternatively, if the existing term could have a transmembrane parent (I am looking for a term with this parentage)

Thanks

Val

note to self 4ddf3364ed97a8f4

Discussion

  • Paola Roncaglia

    Paola Roncaglia - 2012-12-19

    Hi Val,

    Since 'regulation of dipeptide transmembrane transport' is already in GO, you may request the term above yourself via TermGenie please, choosing the 'regulation_by' template (last in the pull-down menu). It would get the same transport parent you suggest. Therefore I'm closing this item, but any problems let me know.

    Thanks,
    Paola

     
  • Paola Roncaglia

    Paola Roncaglia - 2012-12-19
    • status: open --> closed-works-for-me
     
  • Valerie Wood

    Valerie Wood - 2012-12-19

    Hi Poala,

    I don't think I can do this with term genie? the regulation term already exits...
    its the transmembrane part I need....
    Val

     
  • Valerie Wood

    Valerie Wood - 2012-12-19
    • status: closed-works-for-me --> open-works-for-me
     
  • Midori Harris

    Midori Harris - 2012-12-19

    use the 'regulation by' template (for me it's at the bottom of the list):

    put 'regulation of dipeptide transmembrane transport' in the first box, and 'regulation of transcription from RNA polymerase II promoter' in the second box

     
  • Paola Roncaglia

    Paola Roncaglia - 2012-12-19

    Hi Val,
    Unless I'm missing something, yes it is possible to create such terms via TermGenie. I've added it as follows - and yes it's the same as Midori suggests:

    [Term]
    id: GO:1901718
    name: regulation of dipeptide transmembrane transport by regulation of transcription from RNA polymerase II promoter
    namespace: biological_process
    def: "A regulation of transcription from RNA polymerase II promoter that results in regulation of dipeptide transmembrane transport." [GOC:TermGenie, GOC:vw]
    is_a: GO:0035953 {is_inferred="true"} ! regulation of dipeptide transport by regulation of transcription from RNA polymerase II promoter
    is_a: GO:2001148 {is_inferred="true"} ! regulation of dipeptide transmembrane transport
    intersection_of: GO:0006357 ! regulation of transcription from RNA polymerase II promoter
    intersection_of: results_in GO:2001148 ! regulation of dipeptide transmembrane transport
    relationship: results_in GO:2001148 {is_inferred="true"} ! regulation of dipeptide transmembrane transport

    Thanks,
    Paola

     
  • Paola Roncaglia

    Paola Roncaglia - 2012-12-19
    • status: open-works-for-me --> closed-accepted
     
  • Valerie Wood

    Valerie Wood - 2012-12-19
    • status: closed-accepted --> open-accepted
     
  • Valerie Wood

    Valerie Wood - 2012-12-19

    ah righty, I didn't reilize there was a "regulation by"
    val

     
  • Paola Roncaglia

    Paola Roncaglia - 2012-12-19
    • assigned_to: nobody --> paolaroncaglia
    • status: open-accepted --> closed-accepted
     

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