For the keyword mapping I would like a GO term
to use for proteins involved in the formation/development
of a fruiting body. My also need a component term?
Not affecting many proteins.
Process terms should be OK; probably need sensu Bacteria and sensu Eukarya instances. We would only add a component term if there are species in which a fruiting body is actually part of a single cell rather than multicellular. I've found only multicellular fruiting bodies so far (though admittedly I've only looked in Alberts).
If you would like to refer to this comment somewhere else in this project, copy and paste the following link:
It's the same sort of concept as a tissue or organ, so it would be better suited to an anatomy ontology (albeit a simple one, e.g. for slime molds such as Dictyostelium).
If you would like to refer to this comment somewhere else in this project, copy and paste the following link:
It's the same sort of concept as a tissue or organ, so it would be better suited to an anatomy ontology (albeit a simple one, e.g. for slime molds such as Dictyostelium).
If you would like to refer to this comment somewhere else in this project, copy and paste the following link:
Logged In: YES
user_id=436423
Process terms should be OK; probably need sensu Bacteria and sensu Eukarya instances. We would only add a component term if there are species in which a fruiting body is actually part of a single cell rather than multicellular. I've found only multicellular fruiting bodies so far (though admittedly I've only looked in Alberts).
Logged In: YES
user_id=463625
You also have a extracellular component term...should it go there?
thanks
Ev
Logged In: YES
user_id=436423
It's the same sort of concept as a tissue or organ, so it would be better suited to an anatomy ontology (albeit a simple one, e.g. for slime molds such as Dictyostelium).
Logged In: YES
user_id=436423
It's the same sort of concept as a tissue or organ, so it would be better suited to an anatomy ontology (albeit a simple one, e.g. for slime molds such as Dictyostelium).
Logged In: YES
user_id=436423
added a process term GO:0030581)
more instances on the way
Logged In: YES
user_id=436423
instances added:
GO:0030583 fruiting body formation (sensu Bacteria)
GO:0030584 fruiting body formation (sensu Fungi)
GO:0030587 fruiting body formation (sensu Dictyostelium)