From: SourceForge.net <no...@so...> - 2006-01-09 15:06:31
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GO website item #1397829, was opened at 2006-01-05 15:38 Message generated for change (Comment added) made by girlwithglasses You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=600519&aid=1397829&group_id=36855 Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: None Group: None >Status: Closed >Resolution: Accepted Priority: 5 Submitted By: Midori Harris (gomidori) >Assigned to: girlwithglasses (girlwithglasses) Summary: New tool: JAFA Initial Comment: from mailing list: Dear GO team, We hope you will find the following tool suitable for display on the Gene Ontology Tools page. To follow is a brief description of the JAFA function prediction meta-server: # Tool name JAFA: Joint Assembly of Functional Annotations # URL for the tool http://jafa.burnham.org # Name and URL of the organization that produced the tool Burnham Institute for Medical research: the Godzik Lab http://bioinformatics.burnham.org # Tool type: browser / annotation / microarray-related / other Tool type: a function prediction meta-server ("other", I guess) # Brief description of tool JAFA accepts a protein sequence, submits it to several function prediction programs, and provides an aggregate of the predictions in a single, easy to read display, based on GO terms. The user may click through to the individual servers, to AmiGO and QuickGO. JAFA also provides a downloadable XML file with the results, to enable incorporation in yet larger workflows. # Is the tool web-based or standalone? Web based # Is the tool free to academics? Yes. # Is the tool open source? To be determined. # Any associated publications (please give PubMed ID if available) No associated publications yet. Please email me with any questions of clarifications you may have. Kindest regards, Iddo Friedberg -- Iddo Friedberg, Ph.D. Burnham Institute for Medical Research 10901 N. Torrey Pines Rd. La Jolla, CA 92037 USA Tel: +1 (858) 646 3100 x3516 Fax: +1 (858) 713 9949 http://iddo-friedberg.org idoerg at burnham dot org ---------------------------------------------------------------------- >Comment By: girlwithglasses (girlwithglasses) Date: 2006-01-09 15:06 Message: Logged In: YES user_id=473796 Added; see GO.tools.other.shtml#jafa ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=600519&aid=1397829&group_id=36855 |