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#966 SP_KW:KW-0346

GOA
closed-fixed
GOA project at EBI
UniProt KW2GO mapping (21)
5
2014-10-10
2012-05-16
Valerie Wood
No

This is annotated to response to stress, and although the S. cerevisiae gene is implicated in response to salt stress this isn't evident in fission yeast.
This is probably too general a mapping (response to stress) we don't usually make GO annotations unless we know the specific stress involved.

Discussion

  • Midori Harris

    Midori Harris - 2012-05-17
    • labels: --> UniProt KW2GO mapping
    • milestone: --> GOA
    • assigned_to: nobody --> goa-ebi
     

  • rach_huntley

    rach_huntley - 2014-10-06

    Hi Val,

    Can you tell us which gene this refers to?
    Rachael.

     

  • Valerie Wood

    Valerie Wood - 2014-10-09

    There are lots but I'll close this one. I don't think this is a very useful term to map to. It seems that a few of these KW might be added just on the basis of increased expression in respons e to some stress. We wouldn't use the to make a GO annotation so I don't think its useful to make a GO mapping from them either.

    A couple of e.gs for future ref

    Q10719 fus1
    Q9UT09 (pombe and the S. cerevisiae ortholog)

    etc

     

  • rach_huntley

    rach_huntley - 2014-10-10

    Yes, good point, this term should only be used for electronic annotations when nothing more specific can be found for a large number of gene products. This isn't the case for keywords as they are applied to individual proteins. I have deleted the mapping.
    Rachael.

     

  • rach_huntley

    rach_huntley - 2014-10-10
    • Description has changed:

    Diff:

    --- old
+++ new
@@ -1,4 +1,3 @@
-

 This is annotated to response to stress, and although the S. cerevisiae gene is implicated in response to salt stress this isn't evident in fission yeast.
 This is probably too general a mapping \(response to stress\) we don't usually make GO annotations unless we know the specific stress involved.
    • status: open --> closed-fixed
     

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