Recent changes to Quick PCAhttps://sourceforge.net/p/gbchen/wiki/Quick%2520PCA/Recent changes to Quick PCAenFri, 07 Mar 2014 06:52:39 -0000Quick PCA modified by Guobo Chenhttps://sourceforge.net/p/gbchen/wiki/Quick%2520PCA/<div class="markdown_content"><pre></pre> </div>Guobo ChenFri, 07 Mar 2014 06:52:39 -0000https://sourceforge.netc22b00afdc7dda5ff5074d8543e6f14010ea094fQuick PCA modified by Zhixiang Zhuhttps://sourceforge.net/p/gbchen/wiki/Quick%2520PCA/<div class="markdown_content"><pre>--- v2 +++ v3 @@ -6,7 +6,7 @@ gear qpca --mach-dosage test.mldose.gz --mach-info test.mlinfo --out test gear qpca --mach-dosage-batch dose.txt --mach-info-batch info.txt --out test ~~~~~~~~~~~ -[default score](http://https://sourceforge.net/p/gbchen/wiki/Quick PCA/attachment/bp2.txt.gz) +[default score](https://sourceforge.net/p/gbchen/wiki/Quick PCA/attachment/bp2.txt.gz) Alternatively, the users can explicitly use --score to specify scores. </pre> </div>Zhixiang ZhuFri, 07 Mar 2014 04:36:06 -0000https://sourceforge.net12668372a05e61ad9a6465a210bed27e0159be5dQuick PCA modified by Guobo Chenhttps://sourceforge.net/p/gbchen/wiki/Quick%2520PCA/<div class="markdown_content"><pre>--- v1 +++ v2 @@ -6,12 +6,13 @@ gear qpca --mach-dosage test.mldose.gz --mach-info test.mlinfo --out test gear qpca --mach-dosage-batch dose.txt --mach-info-batch info.txt --out test ~~~~~~~~~~~ +[default score](http://https://sourceforge.net/p/gbchen/wiki/Quick PCA/attachment/bp2.txt.gz) -Alternatively, the users can explicitly use --score - +Alternatively, the users can explicitly use --score to specify scores. + ~~~~~~~~~~~ -gear qpca --bfile test --out test -gear qpca --mach-dosage test.mldose.gz --mach-info test.mlinfo --out test -gear qpca --mach-dosage-batch dose.txt --mach-info-batch info.txt --out test +gear qpca --score sx.txt --bfile test --out test +gear qpca --score sx.txt --mach-dosage test.mldose.gz --mach-info test.mlinfo --out test +gear qpca --score sx.txt --mach-dosage-batch dose.txt --mach-info-batch info.txt --out test ~~~~~~~~~~~ </pre> </div>Guobo ChenFri, 07 Mar 2014 03:57:37 -0000https://sourceforge.netb43bec57d8527839e5f7c29020c9ed26d4d67700Quick PCA modified by Guobo Chenhttps://sourceforge.net/p/gbchen/wiki/Quick%2520PCA/<div class="markdown_content"><h2 id="quick-pca">Quick PCA</h2> <div class="codehilite"><pre><span class="n">gear</span> <span class="n">qpca</span> <span class="o">--</span><span class="n">bfile</span> <span class="n">test</span> <span class="o">--</span><span class="n">out</span> <span class="n">test</span> <span class="n">gear</span> <span class="n">qpca</span> <span class="o">--</span><span class="n">mach</span><span class="o">-</span><span class="n">dosage</span> <span class="n">test</span><span class="p">.</span><span class="n">mldose</span><span class="p">.</span><span class="n">gz</span> <span class="o">--</span><span class="n">mach</span><span class="o">-</span><span class="n">info</span> <span class="n">test</span><span class="p">.</span><span class="n">mlinfo</span> <span class="o">--</span><span class="n">out</span> <span class="n">test</span> <span class="n">gear</span> <span class="n">qpca</span> <span class="o">--</span><span class="n">mach</span><span class="o">-</span><span class="n">dosage</span><span class="o">-</span><span class="n">batch</span> <span class="n">dose</span><span class="p">.</span><span class="n">txt</span> <span class="o">--</span><span class="n">mach</span><span class="o">-</span><span class="n">info</span><span class="o">-</span><span class="n">batch</span> <span class="n">info</span><span class="p">.</span><span class="n">txt</span> <span class="o">--</span><span class="n">out</span> <span class="n">test</span> </pre></div> <p>Alternatively, the users can explicitly use --score</p> <div class="codehilite"><pre><span class="n">gear</span> <span class="n">qpca</span> <span class="o">--</span><span class="n">bfile</span> <span class="n">test</span> <span class="o">--</span><span class="n">out</span> <span class="n">test</span> <span class="n">gear</span> <span class="n">qpca</span> <span class="o">--</span><span class="n">mach</span><span class="o">-</span><span class="n">dosage</span> <span class="n">test</span><span class="p">.</span><span class="n">mldose</span><span class="p">.</span><span class="n">gz</span> <span class="o">--</span><span class="n">mach</span><span class="o">-</span><span class="n">info</span> <span class="n">test</span><span class="p">.</span><span class="n">mlinfo</span> <span class="o">--</span><span class="n">out</span> <span class="n">test</span> <span class="n">gear</span> <span class="n">qpca</span> <span class="o">--</span><span class="n">mach</span><span class="o">-</span><span class="n">dosage</span><span class="o">-</span><span class="n">batch</span> <span class="n">dose</span><span class="p">.</span><span class="n">txt</span> <span class="o">--</span><span class="n">mach</span><span class="o">-</span><span class="n">info</span><span class="o">-</span><span class="n">batch</span> <span class="n">info</span><span class="p">.</span><span class="n">txt</span> <span class="o">--</span><span class="n">out</span> <span class="n">test</span> </pre></div> </div>Guobo ChenFri, 07 Mar 2014 03:47:46 -0000https://sourceforge.net559f0913d1f816b91e1f4fba885e2cf0208c75ca