https://sourceforge.net/p/gatk-2brad/wiki/Home/Recent changes to HomeenWed, 15 Apr 2015 05:48:36 -0000https://sourceforge.net/p/gatk-2brad/wiki/Home/<div class="markdown_content"><p>April 15, 2015:<br /> - new version of replicatesMatch.pl<br /> - vcf2dadi.pl added</p></div>Mikhail V. MatzWed, 15 Apr 2015 05:48:36 -0000https://sourceforge.nete4b8cbecadffe200f018c06e0b43b4dfda841172https://sourceforge.net/p/gatk-2brad/wiki/Home/<div class="markdown_content"><p>March 10, 2015: minor corrections to scripts manual and walkthrough</p></div>Mikhail V. MatzTue, 10 Mar 2015 22:23:22 -0000https://sourceforge.net976357dd15e3bbe1377d5bdd1d06649b02581f91https://sourceforge.net/p/gatk-2brad/wiki/Home/<div class="markdown_content"><p>October 29, 2014: <br /> Updated 2bRAD_bowtie2_launch.pl to include bowtie2 options for more stringent cutoff while reporting "valid" alignments in the --local mode (--score-min L,16,1). This change would make genotyping more accurate (and conservative) when mapping to heterologous (not-same-species) genome. Also added option not to report unaligned reads (--no-unal), this should not affect anything except save disk space. </p></div>Mikhail V. MatzWed, 29 Oct 2014 17:27:05 -0000https://sourceforge.net31b9260551534267c03fec884b27883aafc5ae00https://sourceforge.net/p/gatk-2brad/wiki/Home/<div class="markdown_content"><p>Welcome to your wiki!</p> <p>This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: <span>[SamplePage]</span>.</p> <p>The wiki uses <a class="" href="/p/gatk-2brad/wiki/markdown_syntax">Markdown</a> syntax.</p> <p><h6>Project Members:</h6> <ul class="md-users-list"> <li><a href="/u/c-monster">Mikhail V. Matz</a> (admin)</li> </ul><br /> </p><p><span class="download-button-543ad331909547615e298ae3" style="margin-bottom: 1em; display: block;"></span></p><p></p></div>Mikhail V. MatzSun, 12 Oct 2014 19:14:57 -0000https://sourceforge.netea84bbae76146d0b3946a937b2fba998a45430c3