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Mikhail V. Matz (admin)

Discussion

Mikhail V. Matz - 2014-10-29

October 29, 2014:
Updated 2bRAD_bowtie2_launch.pl to include bowtie2 options for more stringent cutoff while reporting "valid" alignments in the --local mode (--score-min L,16,1). This change would make genotyping more accurate (and conservative) when mapping to heterologous (not-same-species) genome. Also added option not to report unaligned reads (--no-unal), this should not affect anything except save disk space.

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Mikhail V. Matz - 2015-03-10

March 10, 2015: minor corrections to scripts manual and walkthrough

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Mikhail V. Matz - 2015-04-15

April 15, 2015:
- new version of replicatesMatch.pl
- vcf2dadi.pl added

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