Re: [gate-users] Error loading gazetteer after upgrading to GATE 8.5.1

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You'll need to delete the old .gazbin cache file as these are not
compatible across releases of the StringAnnotation plugin - the gazbin
file is only a cache of the data structure that the extended gazetteer
builds from the .lst files, so it's safe to delete it and the plugin
will simply rebuild it from the lists next time.

Ian

P.S. this list is now deprecated, new questions should be posted at
https://groups.io/g/gate-users instead

On 28/06/2018 16:45, Lacey A.S. wrote:
> Hi – I have recently upgraded from GATE 8.4.1 TO 8.5.1.
> 
>  
> 
> As per instuctions, when running my people congirufed to work in 8.4.1,
> I have used the Upgrade Tool from within gate to upgrade all of my
> pipelines. I am however getting a few errors like this when loading
> gazetteers:
> 
>  
> 
> DEBUG: case conversion language set to en
> 
> DEBUG: setting case sensitive to true
> 
> DEBUG: running init(), caseConversionLanguage is en
> 
> DEBUG running incrementGazStore
> 
> DEBUG: generating the gaz store key:  cs=true
> url=file:/C:/Users/arron/yodie-pipeline/finalize/supplemental-gazetteer/disease-acronyms.def
> lang=en
> 
> Creating gazetteer for
> file:/C:/Users/arron/yodie-pipeline/finalize/supplemental-gazetteer/disease-acronyms.def
> 
> Loading cache file from
> file:/C:/Users/arron/yodie-pipeline/finalize/supplemental-gazetteer/disease-acronyms.gazbin
> 
> gate.creole.ResourceInstantiationException: Could not load gazetteer
> 
>               at
> com.jpetrak.gate.stringannotation.extendedgazetteer.GazetteerBase.incrementGazStore(GazetteerBase.java:208)
> 
>               at
> com.jpetrak.gate.stringannotation.extendedgazetteer.GazetteerBase.init(GazetteerBase.java:183)
> 
>               at gate.Factory.createResource(Factory.java:429)
> 
>               at
> gate.util.persistence.ResourcePersistence.createObject(ResourcePersistence.java:151)
> 
>               at
> gate.util.persistence.PRPersistence.createObject(PRPersistence.java:88)
> 
>               at
> gate.util.persistence.LanguageAnalyserPersistence.createObject(LanguageAnalyserPersistence.java:53)
> 
>               at
> gate.util.persistence.PersistenceManager.getTransientRepresentation(PersistenceManager.java:820)
> 
>               at
> gate.util.persistence.CollectionPersistence.createObject(CollectionPersistence.java:82)
> 
>               at
> gate.util.persistence.PersistenceManager.getTransientRepresentation(PersistenceManager.java:820)
> 
>               at
> gate.util.persistence.ControllerPersistence.createObject(ControllerPersistence.java:64)
> 
>               at
> gate.util.persistence.ConditionalControllerPersistence.createObject(ConditionalControllerPersistence.java:52)
> 
>               at
> gate.util.persistence.ConditionalSerialAnalyserControllerPersistence.createObject(ConditionalSerialAnalyserControllerPersistence.java:56)
> 
>               at
> at.ofai.gate.modularpipelines.ParametrizedCorpusControllerPersistence.createObject(ParametrizedCorpusControllerPersistence.java:81)
> 
>               at
> gate.util.persistence.PersistenceManager.getTransientRepresentation(PersistenceManager.java:820)
> 
>               at
> gate.util.persistence.PersistenceManager.getTransientRepresentation(PersistenceManager.java:801)
> 
>               at
> gate.util.persistence.PersistenceManager.loadObjectFromUri(PersistenceManager.java:1270)
> 
>               at
> gate.util.persistence.PersistenceManager.loadObjectFromUrl(PersistenceManager.java:1165)
> 
>               at
> at.ofai.gate.modularpipelines.Pipeline.initialise_pipeline(Pipeline.java:192)
> 
>               at
> at.ofai.gate.modularpipelines.Pipeline.init(Pipeline.java:107)
> 
>               at gate.Factory.createResource(Factory.java:429)
> 
>               at
> gate.util.persistence.ResourcePersistence.createObject(ResourcePersistence.java:151)
> 
>               at
> gate.util.persistence.PRPersistence.createObject(PRPersistence.java:88)
> 
>               at
> gate.util.persistence.PersistenceManager.getTransientRepresentation(PersistenceManager.java:820)
> 
>               at
> gate.util.persistence.CollectionPersistence.createObject(CollectionPersistence.java:82)
> 
>               at
> gate.util.persistence.PersistenceManager.getTransientRepresentation(PersistenceManager.java:820)
> 
>               at
> gate.util.persistence.ControllerPersistence.createObject(ControllerPersistence.java:64)
> 
>               at
> gate.util.persistence.ConditionalControllerPersistence.createObject(ConditionalControllerPersistence.java:52)
> 
>               at
> gate.util.persistence.ConditionalSerialAnalyserControllerPersistence.createObject(ConditionalSerialAnalyserControllerPersistence.java:56)
> 
>               at
> at.ofai.gate.modularpipelines.ParametrizedCorpusControllerPersistence.createObject(ParametrizedCorpusControllerPersistence.java:81)
> 
>               at
> gate.util.persistence.PersistenceManager.getTransientRepresentation(PersistenceManager.java:820)
> 
>               at
> gate.util.persistence.PersistenceManager.getTransientRepresentation(PersistenceManager.java:801)
> 
>               at
> gate.util.persistence.PersistenceManager.loadObjectFromUri(PersistenceManager.java:1270)
> 
>               at
> gate.gui.MainFrame$LoadResourceFromFileAction$1.run(MainFrame.java:3687)
> 
>               at java.lang.Thread.run(Thread.java:748)
> 
> Caused by: gate.util.GateRuntimeException: Could not re-load gazstore
> object
> fromfile:/C:/Users/arron/yodie-pipeline/finalize/supplemental-gazetteer/disease-acronyms.gazbin
> 
>               at
> com.jpetrak.gate.stringannotation.extendedgazetteer.trie.GazStoreTrie3.load(GazStoreTrie3.java:527)
> 
>               at
> com.jpetrak.gate.stringannotation.extendedgazetteer.GazetteerBase.loadDataFromDef(GazetteerBase.java:332)
> 
>               at
> com.jpetrak.gate.stringannotation.extendedgazetteer.GazetteerBase.loadData(GazetteerBase.java:316)
> 
>               at
> com.jpetrak.gate.stringannotation.extendedgazetteer.GazetteerBase.incrementGazStore(GazetteerBase.java:205)
> 
>               ... 33 more
> 
> Caused by: java.io.InvalidClassException:
> com.jpetrak.gate.stringannotation.extendedgazetteer.GazStore; local
> class incompatible: stream classdesc serialVersionUID =
> 8975083677992112304, local class serialVersionUID = 6230939102737971488
> 
>               at
> java.io.ObjectStreamClass.initNonProxy(ObjectStreamClass.java:616)
> 
>               at
> java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1843)
> 
>               at
> java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1713)
> 
>               at
> java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1843)
> 
>               at
> java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1713)
> 
>               at
> java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:2000)
> 
>               at
> java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1535)
> 
>               at
> java.io.ObjectInputStream.readObject(ObjectInputStream.java:422)
> 
>               at
> com.jpetrak.gate.stringannotation.extendedgazetteer.trie.GazStoreTrie3.load(GazStoreTrie3.java:525)
> 
>  
> 
> Could anyone shed some light on this please?
> 
>  
> 
> Thank you,
> 
> Arron
> 
> 
> 
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-- 
Ian Roberts               | Department of Computer Science
i.r...@dc...  | University of Sheffield, UK