The problem is that it is not possible to activate or deactivate the cloud on the root node of a map.
Even if this does not look to be very useful from a display point of view, some other tools (e.g. iThoughts) allow it and they create the <cloud> element when exporting to Freemind 0.9 file format. In that case, to remove the cloud on the root node, I had to edit the .mm file and remove the <cloud>.
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