Activity for fourSig
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Joshua Starmer posted a comment on discussion General Discussion
That's not a bad idea, and a quick way to do this would be to add pseudo-counts to each fragment. That would make the difference of 1 or 2 reads not nearly as significant.
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minor changes
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added some basic error checking
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trotos posted a comment on discussion General Discussion
Hi, I am using your R script for identification of 4C interactions. It works well...
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Hi Joshua, How can I extract the FDR from your pipeline? I want to create a table...
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Fixed a problem when there are no reads mapping...
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Modified the messages printed when the user inv...
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minor typo correction
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fourSig released /fourSig.2.2.tar.gz
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fixed some bugs with saving output in BED format
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added to help with the documentation
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Made things easier for "trans" analyses.
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improved the functions that generate Bed and Be...
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improved documentation for BED and BedGraph files
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fixed a problem where files intended for the UC...
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We can now read BAM files, and chromosome names...
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improved error messages
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Fixed a bug in saveSigAsBed - before it could o...
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remove .Rhistory
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Initial commit
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