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#1 Problem running spm_tbx_roi

open
nobody
None
5
2001-02-20
2001-02-20
Bill Budd
No

Discussion

  • Nobody/Anonymous

    Logged In: YES
    user_id=157836
    Browser: Mozilla/4.5 [en] (Win95; I)

    Hi Russ

    Not sure what I'm doing wrong but would appreciate any help as the program looks very useful. I
    have not been able to track down any documentation for this script but I'm running matlab 5 on a
    sun with SPM99 installed.

    When I choose the 'Define Functional ROI' the program outputs the table of clusters but no figure
    and returns to the matlab prompt and I can't seem to work out the problem. The output I get
    goes something like this:

    SPM99: spm_tbx_roi (v2.31) 21:35:57 - 20/02/2001

    Using radius of 20 mm

    SPM99: spm_getSPM (v2.35) 21:36:07 - 20/02/2001
    ----------------------------------------------------------------
    SPM computation : ...done
    contrast structure : ...saved to xCon.mat

    hReg =

    157.0044

    Warning: Out of range or non-integer values truncated during conversion from
    double to character.
    > In /home/mri/bill/bill_defaults/spm_list.m at line 190
    In /home/mri/bill/m/roi/spm_roi_define.m at line 44
    In /home/mri/bill/m/roi/spm_tbx_roi.m at line 42
    Warning: Empty registry handle
    > In /home/mri/spm99/spm_XYZreg.m at line 566
    In /home/mri/bill/bill_defaults/spm_list.m at line 565
    In /home/mri/bill/m/roi/spm_roi_define.m at line 44
    In /home/mri/bill/m/roi/spm_tbx_roi.m at line 42

    TabDat =

    tit: 157.0044
    hdr: {2x10 cell}
    fmt: {1x10 cell}
    str: 'table shows all local maxima > 20.0mm apart'
    ftr: {4x2 cell}
    dat: {18x10 cell}

    Checking Max #1: ??? Undefined function or variable 'find_sphere'.

    Error in ==> /home/mri/bill/m/roi/spm_roi_define.m
    On line 61 ==> sphere(cluster)=find_sphere(point,radius,SPM,VOL);

    Error in ==> /home/mri/bill/m/roi/spm_tbx_roi.m
    On line 42 ==> spm_roi_define(radius,Finter);

    >>

     
  • Russ Poldrack

    Russ Poldrack - 2001-07-30

    Logged In: YES
    user_id=95076

    find_sphere.m has now been added to the distribution and
    should alleviate this problem.
    cheers
    russ

     

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