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Home modified by Desai Trunil Shamrao

Desai Trunil Shamrao — Mon, 16 Oct 2017 11:36:09 -0000

--- v4
+++ v5
@@ -1,4 +1,4 @@
-FluxPyt package is developed to perform stationary metabolic flux analysis 
+FluxPyt package is developed to perform stationary 13C-metabolic flux analysis 
 calculations for estimation of intracellular flux distribution.
 FluxPyt is written in python3.

Home modified by Desai Trunil Shamrao

Desai Trunil Shamrao — Mon, 16 Oct 2017 09:23:33 -0000

--- v3
+++ v4
@@ -22,23 +22,65 @@

-Installation:
+Installation ( for Windows):
 ============
+These directions are written for Windows users who are not familiar with Python programming.
+
 Download and install Anaconda distribution (version 3.4.4.0 was used in this tutorial).
-It has most of the packages essential for running FluxPyt.
-For installing packages that are not present in the Anaconda distribution, install them separately. Following are the instructions:
+
 Open an Anaconda command prompt.
 Click on Windows start button.
 Type 'anaconda'. A link to open Anaconda command promt will be shown.

-Type following commands to install packages:
+Type following commands to create new environment in Anaconda for running fluxpyt:

->> conda install -c sjpfenninger glpk    #this works only for windows
->> conda install -c conda-forge lmfit
->> conda install csvkit
+conda create -n fluxpyt_env python=3.6.1 numpy=1.12.1 scipy=0.19.0 sympy=1.0

-If additional packages are required, read how to install packages using conda.
-Type following command for installing FluxPyt
+activate fluxpyt_env

->> pip install fluxpyt
+conda install -c conda-forge lmfit

+conda install -c sjpfenninger glpk
+
+conda install csvkit=0.9.1
+
+conda install matplotlib=2.0.2
+
+conda install pandas=0.20.1
+
+conda install spyder
+
+pip install fluxpyt
+
+
+=========
+Changelog
+=========
+
+Version 0.1.3
+=============
+-Changed installation directions in README.rst
+
+Version 0.1.2
+=============
+-Changed installation directions in README.rst
+
+Version 0.1.1
+===========
+-Project setup created by Pyscaffold.
+
+-Generated documentation using Sphinx
+
+Version 0.1
+===========
+-Initial release
+
+
+
+
+
+Note
+====
+
+This project has been set up using PyScaffold 2.5.8. For details and usage
+information on PyScaffold see http://pyscaffold.readthedocs.org/.

Home modified by Desai Trunil Shamrao

Desai Trunil Shamrao — Fri, 13 Oct 2017 11:04:09 -0000

--- v2
+++ v3
@@ -1,7 +1,6 @@
 FluxPyt package is developed to perform stationary metabolic flux analysis 
 calculations for estimation of intracellular flux distribution.
-FluxPyt is written in python3. The anaconda package list is provided in 
-the requirements.txt file.
+FluxPyt is written in python3.

 The package was developed as a part of PhD work of Desai Trunil Shamrao at:

Home modified by Desai Trunil Shamrao

Desai Trunil Shamrao — Fri, 13 Oct 2017 09:46:15 -0000

--- v1
+++ v2
@@ -1,8 +1,45 @@
-Welcome to your wiki!
+FluxPyt package is developed to perform stationary metabolic flux analysis 
+calculations for estimation of intracellular flux distribution.
+FluxPyt is written in python3. The anaconda package list is provided in 
+the requirements.txt file.

-This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].
+The package was developed as a part of PhD work of Desai Trunil Shamrao at:

-The wiki uses [Markdown](/p/fluxpyt/wiki/markdown_syntax/) syntax.
+Systems Biology for Biofuels Group
+Group Leader, Dr. Shireesh Srivastava
+International Centre for Genetic Engineering and Biotechnology (ICGEB),
+Aruna Asaf Ali Marg,
+New Delhi.

-[[members limit=20]]
-[[download_button]]
+
+Acknowledgements
+================
+The PhD fellowship of Trunil is funded by the Council for Scientific 
+and Industrial Research (CSIR).
+The project is funded by Department of Biotechnology (DBT)
+
+The author specially thanks Ahmad for being there to discuss issues and to 
+help get rid of few bugs.
+
+
+
+Installation:
+============
+Download and install Anaconda distribution (version 3.4.4.0 was used in this tutorial).
+It has most of the packages essential for running FluxPyt.
+For installing packages that are not present in the Anaconda distribution, install them separately. Following are the instructions:
+Open an Anaconda command prompt.
+Click on Windows start button.
+Type 'anaconda'. A link to open Anaconda command promt will be shown.
+
+Type following commands to install packages:
+
+>> conda install -c sjpfenninger glpk    #this works only for windows
+>> conda install -c conda-forge lmfit
+>> conda install csvkit
+
+If additional packages are required, read how to install packages using conda.
+Type following command for installing FluxPyt
+
+>> pip install fluxpyt
+

Home modified by Desai Trunil Shamrao

Desai Trunil Shamrao — Tue, 10 Oct 2017 09:39:10 -0000

Welcome to your wiki!

This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].

The wiki uses Markdown syntax.

Project Members:

Desai Trunil Shamrao (admin)