When changing X resolution, the position of windows on all workspaces shift. In my use, all windows shift toward the top left. Simple test case:
xrandr -s 640x480; xrandr -s 1600x1200
Not sure of the exact fluxbox version where this change occured, but it is likely fairly recent. I noticed the problem when my screen was restored after playing a full screen dosbox game, which I hadn't played in a few months.
Arch Linux, x86-64
xorg-server-utils 7.3-1 (xrandr)
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