Activity for FLASH
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Robin van Schendel created ticket #1
-d flag in windows does not work
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synchronicity posted a comment on discussion FLASH discussion
Thanks for the feedback. This is known limitation of FLASH: it only considers substitution...
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Renato Oliveira modified a comment on discussion FLASH discussion
Before enter in a discussion, I would like to congratulate all the people engaged...
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Before enter in a discussion, I would like to congratulate all the people engaged...
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Before enter in a discussion, I would like to congratulate all the people engaged...
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FLASH released /FLASH-1.2.11-windows-bin.zip
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Fix crash in --allow-outies edge case
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v1.2.11
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Suggest directing both stdout and stderr to log...
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v1.2.10
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Always use 64 bits for combined read length cou...
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Warn the user about potential problems with par...
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Warn when >10% of chosen overlaps were longer t...
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Allow combining read pairs in outie orientation
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Report innie and outie combination statistics
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flash.c: Style fix
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Fix --max-overlap help output: default is 65bp,...
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Print warning count at end of output if greater...
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Update NEWS
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With --allow-outie, also produce .innie and .ou...
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xopen(): Fix typo in comment
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README: Fix memory measurement
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v1.2.9
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Improve FLASH help output and README
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xopen(): Set stdin or stdout to binary mode on...
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iostream.c: Add call to posix_fadvise()
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Increase READS_PER_READ_SET if SSE2 enabled
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Size read sets depending on thread count
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Add SSE/SSE2 optimizations
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load_tab_delimited_pair(): Copy tag from read 1...
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Move read utility functions to read_util.c
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Issue error if sequence string contains whitespace
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Use isspace() correctly
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Fix read_util.c comment
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load_tab_delimited_read(): Set tag_len
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Don't list histogram files as output if writing...
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With --to-stdout, redirect informational messag...
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Clarify error message when 1 input file specified
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Add -Ti and -To options
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Fix build when __GNUC__ not defined
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Allow mixed paired-unpaired reads in tab-delimi...
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Log exit status when fatal error occurs
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Note in log if gzip format used
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Minor cleanups
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Fix reading from standard input
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Reorganize I/O code and add tab-delimited support
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