Activity for FLASH
-
Robin van Schendel created ticket #1
-d flag in windows does not work
-
synchronicity posted a comment on discussion FLASH discussion
Thanks for the feedback. This is known limitation of FLASH: it only considers substitution...
-
Renato Oliveira modified a comment on discussion FLASH discussion
Before enter in a discussion, I would like to congratulate all the people engaged...
-
Before enter in a discussion, I would like to congratulate all the people engaged...
-
Before enter in a discussion, I would like to congratulate all the people engaged...
-
FLASH released /FLASH-1.2.11-windows-bin.zip
-
Fix crash in --allow-outies edge case
-
v1.2.11
-
-
-
-
Suggest directing both stdout and stderr to log...
-
v1.2.10
-
Always use 64 bits for combined read length cou...
-
Warn the user about potential problems with par...
-
Warn when >10% of chosen overlaps were longer t...
-
Allow combining read pairs in outie orientation
-
Report innie and outie combination statistics
-
flash.c: Style fix
-
Fix --max-overlap help output: default is 65bp,...
-
Print warning count at end of output if greater...
-
Update NEWS
-
With --allow-outie, also produce .innie and .ou...
-
-
xopen(): Fix typo in comment
-
README: Fix memory measurement
-
v1.2.9
-
-
Improve FLASH help output and README
-
xopen(): Set stdin or stdout to binary mode on...
-
iostream.c: Add call to posix_fadvise()
-
Increase READS_PER_READ_SET if SSE2 enabled
-
Size read sets depending on thread count
-
Add SSE/SSE2 optimizations
-
load_tab_delimited_pair(): Copy tag from read 1...
-
Move read utility functions to read_util.c
-
Issue error if sequence string contains whitespace
-
Use isspace() correctly
-
Fix read_util.c comment
-
load_tab_delimited_read(): Set tag_len
-
Don't list histogram files as output if writing...
-
With --to-stdout, redirect informational messag...
-
Clarify error message when 1 input file specified
-
Add -Ti and -To options
-
Fix build when __GNUC__ not defined
-
Allow mixed paired-unpaired reads in tab-delimi...
-
Log exit status when fatal error occurs
-
Note in log if gzip format used
-
Minor cleanups
-
Fix reading from standard input
-
Reorganize I/O code and add tab-delimited support
1