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Re: [Fink-beginners] molmol bug -- minor
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From: Glenn M. <gl...@ch...> - 2009-09-27 20:56:42
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Hi Jack, Thank you. That did the trick. It's working like the old molmol -- no bug when calculating secondary structure. So what do we do now? Is it worthwhile having the maintainer reset back to openmotif3? Michael, what do you think? I do know from the Wuthrich lab that they no longer support the program and don't have plans to work on it. Thanks all, glenn On Sep 27, 2009, at 9:03 PM, Jack Howarth wrote: > Glenn, > Yes, you need to execute 'fink install molmol' to install the > new copy. Keep in mind that this new copy will block the next > revision in unstable from being built. So after testing, you > want to do 'fink remove molmol', delete or rename the molmol.* > files in /sw/fink/10.4/local/main/finkinfo as well as the > molmol debs it created in /sw/fink/10.4/local/main/binary-darwin > [x86_64/i386/powerpc]. > At that point, a 'fink install molmol' will reinstall the > current (broken) molmol packages in fink. > Jack > > On Sun, Sep 27, 2009 at 07:54:54PM +0200, Glenn Millhauser wrote: >> Okay, did all that. Now do I just run molmol or is there a >> rebuilding >> process? Sorry for being so naive about this. >> thanks >> g >> >> >> On Sep 27, 2009, at 7:32 PM, Jack Howarth wrote: >> >>> Glenn, >>> You would make a local copy of the molmol package files by... >>> >>> cd /sw/fink/10.4/unstable/main/finkinfo/sci >>> cp molmol.* /sw/fink/10.4/local/main/finkinfo >>> cd /sw/fink/10.4/local/main/finkinfo >>> >>> now edit molmol.info, bump the revision by one and >>> change the instances of openmotif4 to openmotif3 for >>> Depends and BuildDepends. >>> Jack >>> >>> On Sun, Sep 27, 2009 at 10:05:25AM +0200, Glenn Millhauser wrote: >>>> Hi Jack, >>>> Thank you for the suggestion. For rebuilding molmol, how do I >>>> select >>>> openmoif3? >>>> glenn >>>> >>>> >>>> On Sep 25, 2009, at 3:32 PM, Jack Howarth wrote: >>>> >>>>> Glenn, >>>>> Try rebuilding molmol locally against openmotif3 again >>>>> and see if the problem disappears. I didn't update it to >>>>> openmotif4 while maintaining it because of concerns that >>>>> its crufty old motif code might not be completely compatible >>>>> with openmotif 2.3. >>>>> Jack >>>>> >>>>> ------------------------------------------------------------------------------ >>>>> Come build with us! The BlackBerry® Developer Conference in >>>>> SF, CA >>>>> is the only developer event you need to attend this year. >>>>> Jumpstart >>>>> your >>>>> developing skills, take BlackBerry mobile applications to market >>>>> and >>>>> stay >>>>> ahead of the curve. Join us from November 9-12, 2009. Register >>>>> now! >>>>> http://p.sf.net/sfu/devconf >>>>> _______________________________________________ >>>>> Fink-beginners mailing list >>>>> Fin...@li... >>>>> http://news.gmane.org/gmane.os.apple.fink.beginners >>>> >>>> >>>> >>>> Glenn Millhauser >>>> Department of Chemistry & Biochemistry >>>> UC Santa Cruz >>>> Santa Cruz, CA 95064 >>>> >>>> 831 459 2176 voice >>>> 831 459 2935 fax >>>> 831 566 3337 cell >>>> 831 824 4645 google voice (rings to cell and office) >>>> >>>> gl...@ch... >>>> http://chemistry.ucsc.edu/~glennm >>>> >>>> >>>> >> >> >> >> Glenn Millhauser >> Department of Chemistry & Biochemistry >> UC Santa Cruz >> Santa Cruz, CA 95064 >> >> 831 459 2176 voice >> 831 459 2935 fax >> 831 566 3337 cell >> 831 824 4645 google voice (rings to cell and office) >> >> gl...@ch... >> http://chemistry.ucsc.edu/~glennm >> >> >> Glenn Millhauser Department of Chemistry & Biochemistry UC Santa Cruz Santa Cruz, CA 95064 831 459 2176 voice 831 459 2935 fax 831 566 3337 cell 831 824 4645 google voice (rings to cell and office) gl...@ch... http://chemistry.ucsc.edu/~glennm |