EXCAVATOR2.2 Error

[Pascal]

Hi,

I am running EXCAVATOR version 2.2 and get the following error message:

WARNING: ignoring environment value of R_HOME
Loading required package: grid
Loading required package: lattice
Loading required package: survival
Loading required package: splines
Loading required package: Formula

Attaching package: ‘Hmisc’

The following objects are masked from ‘package:base’:

format.pval, round.POSIXt, trunc.POSIXt, units

WARNING: ignoring environment value of R_HOME
Read 32 items
Error in if (xi > max(xnbhd) + oSD) { :
missing value where TRUE/FALSE needed
Calls: rbind -> filterOut
In addition: Warning message:
In max(xnbhd) : no non-missing arguments to max; returning -Inf
Execution halted
WARNING: ignoring environment value of R_HOME
Error in file(file, "rt") : cannot open the connection
Calls: read.table -> file
In addition: Warning message:
In file(file, "rt") :
cannot open file '/home/user/Results/Sample1/HSLMResults_Sample1.txt': No such file or directory
Execution halted
Analyzed samples:

I am using R version 3.1.0 and installed the most recent version of Hmisc by Bioconductor:

other attached packages:
[1] DNAcopy_1.38.1 Hmisc_3.14-4 Formula_1.1-1 survival_2.37-7
[5] lattice_0.20-29

Thanks,

Pascal

[Daghrach]

Same here