New release of EP Toolkit.  Some highlights are: upgrades to the filtering functionality, support for BrainVision EEG files, sample-by-sample analysis, latency-locked and jitter-correction averaging, improved EEGlab .set file format support, improved mff file format support, added option to explore rereferencing effects in Topos view, added PARE-corrected average referencing to Transform function.

1) Fixed crash when performing combination of subjects with file containing .cov information.

2) Added -all- and -erpimage- options to the Factors list in View.

3) Fixed keys field of events not being added when missing, resulting in EP files created by older versions of Toolkit not being readable.

4) Fixed crash when there are multiple global and trialwise bad channels.  Apparently Mathworks changed something again in recent versions of Matlab.

5) Fixed crash when running artifact correction on an average file with multiple subjects.

6) Fixed problem where under some circumstances the files after the first of a batch could not be found by the Transform function.

7) Fixed not putting factor variance information in correct location when loading PCA .ept files, resulting in "There are 0 factors that meet the minimum variance criterion" error messages when trying to autoPCA them.

8) Fixed AutoPCA generating nothing but missing data values when maxcentroid and mincentroid measures chosen.

9) Fixed crash in View when overplotting two sets of data where one has regional channels not present in the other.

10) -all- and -erpimage- options in View leave out adds if lower levels are present (e.g., for subjects, leaves out grand averages if individual subjects are present).

11) Fixed weighting not correct when computing difference waves that do not sum to zero (not sure why anyone might do this but fixed just in case).

12) Fixed calculation of the SubNum field (number of subjects going into averages) when combining cells.

13) Based on additional information from the MNE community, made some corrections to how the covariance matrix and the effective sample size are calculated, for when generating FIFF files.

14) in Topos function, for finding peak channels and points and Hz, uses only the first dataset as the index for this.

15) Fixed crash when replacing bad channels in an average file and a cell is bad.

16) Allows choosing either Hanning or multi-taper methods for spectral measures.

17) Eliminated upper bound to smoothing in multi-taper frequency measures as no longer seems to apply.

18) Fixed 'all' option for Window Data leaving out last channel.

19) Repair referencing after performing artifact correction to support performing analyses on unreferenced data, as in spectral analyses.

20) Added conversion of REF channel type to EEG for older EP files, which can otherwise result in various reference channel problems.

21) Added ability to perform PCA on datasets with bad data.

22) FacScr observations are now always arranged with permutations in order of the seven data dimensions.  PCA files made prior to

2.44 cannot be used for two-step PCA.  The first step will need to be rerun.

23) Fixed minimum and maximum values for spectral PCA datasets not being calculated corrected when using View functions.

24) Fixed not able to load in EP files with frequency PCA data.

25) Fixed crash when changing pages in Topos view with frequency data.

26) Fixed 2D expanded head plots for Topos view for frequency data.

27) Fixed jack-knife test possibly conducted on wrong factor or just crashing in Topos view.

28) Fixed rescale option for frequency data in Topos view.

29) Fixed when spectral range changed in View function and dB or psd options are on, the  values are immediately further transformed.

30) Fixed crash on last page of topos for frequency PCA data.

31) Fixed crash when saving edits in Scan function.

32) In the Scan function, fixed all subjects shown as having a bad cell if the first subject in an average dataset has a bad cell.

33) Fixed peak latency of factors expressed as one sample too late in the Edit function.

34) Added legend to wave plots.

35) When using factors to set channel areas in the Window function, can now specify whether to use largest absolute, negative, or positive loadings.

36) Will no longer keep resetting the factor loading threshold back to the original number in the Window function.

37) Fixed crash when running an ANOVA on a windowed text file generated by autoPCA and the adds option is on.

38) Fixed minimum and maximum voltages in View pane not reflecting correct values for single trial data.

39) Added support for reading BrainVision EEG files.

40) Fixed crash in blink template function when frequency or factor files are present by excluding them entirely.

41) Fixed blink template waveform plot not adjusting to new length when switching datasets.

42) For blink template function, fixed marker for blink and saccade not placed at correct latency after switching between datasets with the same number of samples but different baselines.

43) Fixed crash when loading an ept file with no theta values for the electrode coordinates.

44) Fixed crash when there is more than one bad channel and the reference is mean mastoid.

45) Fixed crash in saccade correction due to bug introduced in last version.

46) Fixed crash when the ced file has no type field.

47) Fixed crash in topoplots when there are electrodes without coordinates.

48) Allow for manual windowing of PCA files rather than just autoPCA.

49) Fixed list of trials for single-trial data in View pane not correct.

50) Added simple averaging of trials in Edit function's cell subpane for single-trial data.

51) In preprocessing, if current reference not specified, default to original reference.

52)  Fixed blink and saccade correction in Preprocessing function could issue false error that template had wrong number of electrodes.

53) Fixed crash in Preprocessing function when correcting blink or saccade in continuous file.

54) Fixed crash in Preprocessing when there are multiple chunks and some have blink factors and some do not.

55) Fixed crash in Preprocessing function when replacing bad channels in continuous data.

56) Transforms can be applied to non-EEG channel types and which data mode can be specified.

57) Fixed crash when filtering continuous data and there are no boundary events present.

58) Fixed blank keys event fields being created without a .key after the keys level.

59) Added "starts", "ends", "contains", and "follows" keywords to Segment function.

60) Fixed Edit function reordering cells in single-trial data when anything clicked or changed in the Cells table and they were not already in alphabetical order.

61) Added support for sample-by-sample, CWT, and Woody Filter PCA comparisons using both non-parametric t-tests and jack-knife tests (including addition of STS chanType).

62) In Edit function, fixed deleting wrong cell of single-trial data when cells were not in alphabetical order.

63) Added support for SMI eye-tracking data to be merged with EEG data.

64) Added latency-locked and jitter-correction averaging options.

65) Fixed cov.Nq field (used for FIFF file format support) not being formed correctly when combining subjects, resulting in crashes later on.

66) Fixed subject selection not being applied to .cov.Nq field (used for FIFF file format support), resulting in crashes down the line for combined subject average files.

67) Added fix for crash when trying to read mff files that erroneously label their COM channel as being a reference channel.

68) Fixed crash when saving file with an empty .keys field in EEGlab .set format.

69) Added additional filtering options, including one-pass causal filters and order settings.  Also providing graphs of effects of filtering on the data in the frequency and temporal domains.

70) Simplified event keys field structure.

71) Fixed labels for REG channels being blank when saving EEGlab .set format files.

72) For single_trial data, the event latency values now conform to "for epoched datasets the event latencies are also encoded in sample points with respect to the beginning of the data (as if the data were continuous)". http://sccn.ucsd.edu/wiki/Chapter_03:_Event_Processing rather than being in terms of the beginning of the original continuous data.

73) Fixed adding 'trigger' events if they are already present.

74) Fixed epoch event field in saved .set files referring to trial number from complete dataset rather than in terms of the EEG file (the one condition).

75) Fixed urevent event field in saved .set files reflecting event numbering of full dataset rather than just the one condition in the EEG file.

76) Fixed sometimes adding too many epoch entries when exporting single_trial .set files, resulting in aborted export process.

77) Handles better situation where a field of an event is empty.

78) Fixed bug where windowing of spatial PCAs of ERPs and temporal and spatial PCAs of spectral data started with first sample of the epoch rather than the sample specified.

79) Fixed crash under some conditions when selecting points from a continuous file, as when using the trimData function.

80) Fixed only first event sample being updated when points selected from continuous data, as in trimming data.

81) Fixed boundary events falling on edge of selected time range not being deleted.

82) Fixed edits in trimData function not being saved when clicking on "keep".

83) Fixed crash in blink Template function when the dataset contains a boundary event.

84) Further improved mff file format support.

85) Adds, like blink and saccade channels, are stripped out of preprocessed data if the output file format is not ept.

86) Fixed crash in Edit function when reordering subjects.

87) Fixed .cov.Nq not being updated when stripping off subject adds, resulting in error messages.

88) Fixed CSD option of Transform crashing.

89) Fixed crash when median averaging frequency-domain data.

90) Fixed Topos function not displaying frequency-domain data.

91) Added option to explore effects of rereferencing to View Topos function.

92) In transform function, setting std field to empty rather than trying to rereference.

93) Added PARE-corrected average reference option to the Transform function.

Cheers!

Joe




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Joseph Dien,
Senior Research Scientist
University of Maryland 

Phone: 301-226-8848
Fax: 301-226-8811