Recent changes to EricScript Requirements

WikiPage EricScript Requirements modified by matteo.benelli

matteo.benelli — Tue, 22 Nov 2011 09:36:24 -0000

--- v5 
+++ v6 
@@ -2,7 +2,7 @@
 EricScript uses the BWA aligner to perform the mapping on the transcriptome reference and samtools to handle with SAM/BAM files. Recalibration of the exon junction reference is performed by using BLAT.
 
 
-• Download and install R: http:/cran.r-project.org/
+• Download and install R: http://cran.r-project.org/
 
 • Download and install BWA: http://bio-bwa.sourceforge.net

WikiPage EricScript Requirements modified by matteo.benelli

matteo.benelli — Tue, 22 Nov 2011 09:35:28 -0000

--- v4 
+++ v5 
@@ -2,6 +2,8 @@
 EricScript uses the BWA aligner to perform the mapping on the transcriptome reference and samtools to handle with SAM/BAM files. Recalibration of the exon junction reference is performed by using BLAT.
 
 
+• Download and install R: http:/cran.r-project.org/
+
 • Download and install BWA: http://bio-bwa.sourceforge.net
 
 • Download and install SAMtools: http://samtools.sourceforge.net/

WikiPage EricScript Requirements modified by matteo.benelli

matteo.benelli — Tue, 22 Nov 2011 09:31:20 -0000

--- v3 
+++ v4 
@@ -1,13 +1,12 @@
 EricScript is a software package developed in R, perl and bash scripts. 
-EricScript uses the BWA aligner to perform the mapping on the transcriptome reference and samtools to handle with SAM/BAM files. Recalibration of the exon-exon junction reference is performed by using BLAT.
-
-
+EricScript uses the BWA aligner to perform the mapping on the transcriptome reference and samtools to handle with SAM/BAM files. Recalibration of the exon junction reference is performed by using BLAT.
+
+
 • Download and install BWA: http://bio-bwa.sourceforge.net
 
 • Download and install SAMtools: http://samtools.sourceforge.net/
 
 • Download and install BLAT binaries: http://genome-test.cse.ucsc.edu/~kent/exe/
 
 • Be sure that all of these programs are included in your PATH.
 
-We distribute EricScript with Ensembl gene transcriptome included. For this, you do not need of any other reference to perform the analysis.

WikiPage EricScript Requirements modified by matteo.benelli

matteo.benelli — Tue, 11 Oct 2011 13:50:08 -0000

--- v2 
+++ v3 
@@ -2,11 +2,12 @@
 EricScript uses the BWA aligner to perform the mapping on the transcriptome reference and samtools to handle with SAM/BAM files. Recalibration of the exon-exon junction reference is performed by using BLAT.
 
 
-Download and install BWA: http://bio-bwa.sourceforge.net
-
-Download and install SAMtools: http://samtools.sourceforge.net/
-
-Download and install BLAT binaries: http://genome-test.cse.ucsc.edu/~kent/exe/
-
-Add all of these programs to PATH.
-
+• Download and install BWA: http://bio-bwa.sourceforge.net
+
+• Download and install SAMtools: http://samtools.sourceforge.net/
+
+• Download and install BLAT binaries: http://genome-test.cse.ucsc.edu/~kent/exe/
+
+• Be sure that all of these programs are included in your PATH.
+
+We distribute EricScript with Ensembl gene transcriptome included. For this, you do not need of any other reference to perform the analysis.

WikiPage EricScript Requirements modified by matteo.benelli

matteo.benelli — Tue, 11 Oct 2011 13:46:02 -0000

--- v1 
+++ v2 
@@ -1,2 +1,12 @@
 EricScript is a software package developed in R, perl and bash scripts. 
 EricScript uses the BWA aligner to perform the mapping on the transcriptome reference and samtools to handle with SAM/BAM files. Recalibration of the exon-exon junction reference is performed by using BLAT.
+
+
+Download and install BWA: http://bio-bwa.sourceforge.net
+
+Download and install SAMtools: http://samtools.sourceforge.net/
+
+Download and install BLAT binaries: http://genome-test.cse.ucsc.edu/~kent/exe/
+
+Add all of these programs to PATH.
+

WikiPage Requirements modified by matteo.benelli

matteo.benelli — Tue, 11 Oct 2011 13:35:07 -0000

EricScript is a software package developed in R, perl and bash scripts. EricScript uses the BWA aligner to perform the mapping on the transcriptome reference and samtools to handle with SAM/BAM files. Recalibration of the exon-exon junction reference is performed by using BLAT.