EricScript Requirements

EricScript is a software package developed in R, perl and bash scripts.
EricScript uses the BWA aligner to perform the mapping on the transcriptome reference and samtools to handle with SAM/BAM files. Recalibration of the exon junction reference is performed by using BLAT.

• Download and install R: http://cran.r-project.org/

• Download and install BWA: http://bio-bwa.sourceforge.net

• Download and install SAMtools: http://samtools.sourceforge.net/

• Download and install BLAT binaries: http://genome-test.cse.ucsc.edu/~kent/exe/

• Be sure that all of these programs are included in your PATH.