Home
The goal of this project to implement a graph layout / network visualization algorithm using a recently published relative entropy optimization based method, called Unified Data Representation (Kovács IA et al. Sci Rep. 2015). If you are using the plugin, please cite:
*Ágg B, Császár A, Szalay-Bekő M, Veres DV, Mizsei R, Ferdinandy P, Csermely P and Kovács IA (2019) The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks, Bioinformatics 35(21):4490-4492
Our detailed Tutorial on the use of the plugin: EntOptLayout Tutorial
A video about the version 2.1: EntOptLayout Tutorial Video
The latest version of the plugin can be downloaded from the Cytoscape App Store
Don't hesitate to send any questions, comments or bug reports also to agg.bence {at} med.semmelweis-univ.hu. Any feedback from You is most welcomed!
Good Luck and Have Fun :)
Project Members:
- Bence Ágg (admin)
- Daniel Veres (admin)
- Mate Szalay-Beko (admin)
Authors:
- Bence Agg
- Andrea Császár
- Mate Szalay-Beko
- Dániel V. Veres
- Réka Mizsei
- Péter Ferdinandy
- Péter Csermely
- István A. Kovács
