From emboss-bug ...
Dear Jenny,
On 10/04/2011 03:12 PM, Jenny Barna wrote:
> I have an emboss.default that is Ok with 6.3.1 and I see
> 6.4.0 has a new file emboss.standard, which I have studied,
> and I have tested I can get a specific sequence from the test
> database tswnew but my own definition of uniprot is not working.
> The whole database can be found but not a pointer within eg
> uniprot:cdk4_human
Well spotted ... that is a bug in 6.4.0
It is defaulting to a secondary index for the IDs.
A simple edit of the uniprot.pxid file would fix it, adding the line:
Type Identifier
(and also to the .pxac file)
It should have defaulted to "type identifier" for these index files. We
will make a fix.
regards,
Peter Rice