Elle Microstructural Modelling SVN Code

Add CRITICAL_MISORIENT value for ice
Value of 4 is usual in ice core community

merge.elle.cc - update to call base lib fn for NbFlynns

lattice.cc - initialise maxpics

display.cc
file.cc
flynnarray.cc
attribute.cc
attribarray.cc - added stress attributes
interface.cc - stress attributes. Initialise local variables
check.cc - Catching deleting of flat grain - tj doubly connected to a dj?
crossings.cc- check with AG and Tuebingen - may change back
general.cc - get C-axis conventions right. Also use atan2
misorient.cc - Add AG Misorientation using symmetry ops. Include some doxygen comments
nodes.cc - don't split wrapping flynns until it is more robust
regions.cc - Read and Write Stress attributes
unodes.cc- if a unode does not have an attribute in its list then return dflt or parent flynn value

mineraldb.c - Add symmetry operators and new mineral types with parameters from literature
error.c- update msg so X11 not specified

file.h - update for stress attributes and mineral types
mineraldb.h - declare symmetry fns. Add symmetry types and more mineral parameters
misorient.h - Declare fn Misorientation
regions.h - declare fns to Read and Write Stress attributes
versiondef.h - update version to 2.6.3

UTILITIES
checkangle/checkangle.elle.cc
fn to update orientation and dd if unodes change flynn parent during
checks/merges
convert/basil/basil2elle.cc - output flynn stress
convert/basil/dncom.f - update to dncom.f in basil code
convert/basil/elle2poly.cc - introduce flag to allow user to prevent
topological checks. Default is to run checks.
convert/basil/polygonavg.f - Calculate average stress for each polygon.
Calls STRAIC
convert/basil/strain.f - Update to reworked GH version in Basil.
Added STRAIC (strain at a centroid ie average for element)
convert/ebsd/elle2ebsd.cc - allow output of euler angles in degrees
convert/fft/elle2fft.cc - Add fn to set unode attributes from neighbour flynns
Other changes, moving unodes between flynns as bnodes are moved, need
discussion with AG
convert/fft/fft2elle.cc - - changes, moving unodes between flynns as bnodes are moved, need discussion with AG. Added parameters to
SetUnodeAttributeFromNbFlynn so it will accept a list of moved unodes.
convert/ppm/ppm2elle.elle.cc - need to fix crashes due to fixed array sizes
experiment_launcher/examples.txt- needed EOL/EOF at end of file
experiment_launcher/main.cc - had to fix broken line reading
plot_ugrid/plot_ugrid.elle.cc - stop rubbish output if the file does not have
unodes
shifty/shifty.elle.cc - fix setting of cumulative ss offset
view/show.elle.cc
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basetable.cc canvas.cc dsettings.cc preferences.cc
preferences.h settings.h showelle.cc
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basetable.cc - Fixes to viewing and changing attributes from GUI
preferences.cc, .h - Reworking so user changes in colour, line are reflected
in the preferences GUI for Bnodes and Boundaries. Removed static bitmaps.
Still needs work, unodes not done and line width not changing in main canvas.
settings.h - Add stress attributes to GUI

showelle.cc - Add stress attributes.
Node/Unode locator in Zoom: Allow node/unode info (positions and ids)
to be printed in the case that there are no attributes.

F_INCR_S and F_BULK_S deprecated. Use INCR_S and BULK_S

preferences.cc:
typo (TRIPLE should be TRIPLES) prevented display of triple nodes only