Elle Microstructural Modelling SVN Code

Use the functions in the basecode to remove temporary attributes before
saving the file

Update for Euler ZXZ convention functions

display.cc, unodes.cc:
remove mod code for flynn EULER_3 and default Unode EULER_3
interface.cc, .h:
remove mod code for flynn EULER_3
add function to remove flynn attributes
error.c, parseopts.c:
Try to produce a more useful help message
runopts.cc:
Fixing CellBBox fns so it is uptdated by deformation processes and
reset by reposition
unodes.cc:
Extra output in case of unode position error

ebsd2elle.cc:
Reduced number of user input values - data is assumed to be cropped
in
hkl software so that origin is 0,0
Input only needs to be number of rows and columns?
elle2ebsd.cc:
Allow spacing and width to be floating point rather than integer.
Output
is microns rather than row, col values.
Default output file is elle2ebsd.txt

elle2fft.cc:
Activate flynn DISLOCDEN in case it is not in input file

shelle25.html:
Change version in header message

canvas.cc, preferences.cc, settings.h, wxstart.cc:
New plot option for unodes and flynns - EULER_RGB
EULER_RGB creates a colour using alpha (red), beta (green), gamma
(blue)
Change output format to allow for large values eg DISLOCDEN

FFT code and input files. This version is for 256x256x1 points

Adding fft process in processes/FFT_256

Trying to fix syncmail error

Added functions uneulerZXZ (Euler angles from orientation matrix)
and eulerRange (set Euler angles to 0->2*PI, 0->PI, 0->2*PI)

GBMUnodeUpdate.cc
uses the unode area calculated when a voronoi of the unodes is created
or
CalculateInitialAreas() sets U_ATTRIB_A ??!! hope this attrib is not
used for anything else - specific to fft runs?

flynnarray.h
bool getParent(int flynn1) needed by merge code but no longer exists -
put it in?

general.cc/h
calcfmod for unitcell shear

interface.cc/h
ElleGetFlynnEulerCAxis moved from various processes to basecode. Assumes
ZXZ.

mineraldb.c
Temporarily just parked the symmetry matrices for cubic and hexagonal

misorient.cc/h
new misorient functions
eulerZXZ assumption

polygon.cc
Not sure why index incrementing was changed - safer code?

runopts.cc/h
split SetCellBBox into two functions, one to be called by processes
which deform the cell and the other called by reposition. Trying to fix
shear cumulation and make it more logical.

unodes.cc/h
moved FindUnode from ebsd and process codes to basecode. Allow wrap to
be turned off when finding closest unode to a point.

ElleReassignUnodes()-Problem if unode exactly on a flynn boundary - not
assigned to either flynn?