Elle Microstructural Modelling SVN Code

Rebuilt since adding dgemv.c

Sorry, left the debugging output turned on

Converting strings to wxT

Would prefer default image type to be png (allows transparent bg) but changed back to jpg
for runs with Sandra

elle2poly.cc:
Checks may not be necessary - put them back if required
mat.cc:
order of multiplication important. Code now gives results for C-axis which match output from
HKL, stereonet.
shifty:
Looking for attribute which was not necessarily in file
plotaxes:
This exe is now hacked to output values for checking against other apps

crossings.cc:
Fix source of crash during topology checks
flynnarray.cc:
FIxes to catch bad input to functions
general.cc:
Do proper type cast
init.c:
Initialise rand in case some processes still use it rather than the Elle
random
interface.cc:
Only use F_ style keywords for file input
nodes.h, nodesP.cc
Added a fn which fortran could call in basil2elle (polygonavg.f). This
fn still makes assumptions about the Elle unitcell dimensions and should
be generalised.
splitting.cc:
fix format of triangulation output to file
tripoly.c:
Match eps values
unodes.cc:
Lots of changes and fixes for voronoi of unodes to create enclosing
flynns
voronoi.h:
specifically copy Coords fields

merge:
User option to specify the merging of a specified flynn with another
flynn i.e. remove a particular boundary
Added merge.h, changed merge.elle.cc and merge.main.cc

split:
Viscosity:
Use F_ATTRIB_NAME in file reading and ATTRIB_NAME in code for
setting/getting.

sub_gg:
Fixed odd parameter name in declaration of CalcMisorientationEuler

mat.cc:
Order wrong for matrix multiplication
Fixed sign (error found by Albert)
Added matrix_vector multiplication function

Imakefile:
Added matrix_vector multiplication function

plotaxes.elle.cc:
Changes to parameter lists to allow output of polar data (angle,
azimuth) converted from Euler. Currently only if unodes only in input
file. Will make it a user option and integrate into showelle.
Stereonet matches ebsd software C-axis, lower hemisphere so labels changed.

shifty:
Imakefile - make base and wx. Base makes batch version in binb, wx
copies the batch to binwx. Would you want a gui version?
shifty.h - does nothing but I removed the refs to manuel
shifty.elle.cc - put insome checks for file reading, initialising
variables and writing shift values to same precision as Elle files

plot_ugrid:
Imakefile - only make base and wx.

convert/basil
polygonavg.f:
Checked strain calcs and reverted to ASUM = ASUM + TRI
This should be right, let me know if you have problems with strain
values
Added subroutine MATCHMESHNODE used in matching unodes before and after
deformation
Added subroutine NTRPLTPNT - currently not tested or used so DO NOT USE
Added subroutine CROSSINGS - used while finding pt_in_poly error when pt
on x=0 boundary

c_funcs.cc
Added call to basecode function pointonsegment

Comment symbol error

Changed things (mainly added includes) to get it to compile using gcc 4.3.2. Excluded latte, to many things I did not understand...

ASUM is twice the area of the polygon so INCR_S and BULK_S were incorrect